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The map label for this gene is cph2 [H]

Identifier: 157962730

GI number: 157962730

Start: 3563264

End: 3564886

Strand: Direct

Name: cph2 [H]

Synonym: Spea_2912

Alternate gene names: 157962730

Gene position: 3563264-3564886 (Clockwise)

Preceding gene: 157962729

Following gene: 157962731

Centisome position: 68.86

GC content: 43.75

Gene sequence:

>1623_bases
TTGTTTGCCAGCGCCGTATTTGCCTACCGGATCTGGGTACAGGCTCCAGCTATTGAGCGCTCATTATTAAAAGTATCCGA
GCAAGAGCTCGTTGCATTAAATTTCGCCTTTGAACAGATGAGCAAGCCACTGCATACCATCAATTACGACTATGCAGTTT
GGGATCGAACCTACAGTTATATGAAATCAAACAGTGTTGCGGATAAGCGATATTATGAGCAACACGAATACCCAGATGAC
ACCTTTAAAAGTTTAAAAGTTGATGGCGTATTTATCTTCGATAACCAAAATAATGTCGTTTTTAATAAGGGGTTTCGCCA
CAATAGCGAGCATGAGAAGCTTCAATTTGATTTGATGAACTTTGCAGAGTCGCCTGAAAATAAGCTCCTCTCACCTCTGA
ATAAAATAGCCCTACCGCCTCAGGAGCATCCTTTTAGCCACCCCAGTAGTGTGCCGACGAAAAGTGGGCTTATCGCCACA
AAATATGGCCCAGCGCTATACAATTCCAGCAGTATTTTACAGTCTGACCGCACCGGGCCAATTATGGGCTACATTGTGTT
TATCCGGCTCATTGATGAAGAATTTATGGCAGAGCTATCTAAGTATACTGCTGCTGGCATAGAAATGAGTGTGGTAACAG
CTTCTGACGATGTCGCTCAAATTCCCTATTTAGGCGCGGATTTTGAATTAACTAAATTGCATGCGATTTCAGAGCGGCTT
GTACGTAATATTGACGGCCAACCATTGATAAAGTTTACCTTATATCACACCGATGCCGAGCCCTCCCCTATATTAGGTAG
CGATATCTATATCCTATTGGCAGAAATGTCAGTATTGCTATTATTAGCCTACTACCTCTATTCATACTTCTTAGTGCATC
CAGTAAGAAAGCTTGCTGTCGATATTGAAGAGATGGCTAAGAGCCGAGAGATTAAAAAGCTCAAACACCGCTATCCAATA
ACTGAGTTAGTGAACGTTGCCACTCACTTCAACGCACTTATGGGCACGATTCAAGAACAAACAAAACAGCTCAACGAGCA
AGTTTACATAGATAAGCTAACCAATATTCCTAATCGCCGTGGATTTGAGCAAAGGCTAGAAACTTATTGCCAACTGCTCG
CTCGGCAACAAATTGGCTTTACCCTGATCATTGCCGACGTGGATCACTTCAAAGAGTATAACGACACCCTTGGTCATTTA
GCCGGTGATGAGGCGCTGGTCAAAGTCGCTCAAACCTTGAGTCAGCAATTTTACCGTGCAGACGACATATGCGCGCGTTT
CGGTGGAGAAGAGTTTATTATGCTCTACCGTGATATTCCTGACGAGCCGCTGCAACGTAAACTAGACGCCATGCTGCAGA
GCTTTGAAGATTTAGCATTCCCCCACCCAAGCTCGAAAACGGCTAAGTATGTCACTGTCAGCCTTGGTGTCTGTAAAGTG
TTAGCGGTCGAAGATTTTGAGTTCAAAAGTGACGCTAATATTATTGGCCGTCAAGCCGCATTACTAGCAGATAAAGCCTT
ATATCAAGCAAAGGCCTGTGGCCGCAATCAATACAAGAAGGTCAGCCTATTAATCGATGAAATAGAAGCATTAGAAAGCA
ATCACCCGAGCGCTCGACCATAA

Upstream 100 bases:

>100_bases
TAGAGTAATACTCTGTTTTGAAAGGTTTCTAATTATCATCCAGCTAAAATCTCAAACCTTTAATCAGCTGCAACTTAAGA
TTTCGGTCGCTATTTTTGTC

Downstream 100 bases:

>100_bases
ATGACTTGAACACAAGCTATAACAGCAAAGAGCTATTATTAGGAATAGATCAAATAAAATGTAAGTTTAACAATGTAAAC
TTGCGCCCCAAATTCAAATT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MFASAVFAYRIWVQAPAIERSLLKVSEQELVALNFAFEQMSKPLHTINYDYAVWDRTYSYMKSNSVADKRYYEQHEYPDD
TFKSLKVDGVFIFDNQNNVVFNKGFRHNSEHEKLQFDLMNFAESPENKLLSPLNKIALPPQEHPFSHPSSVPTKSGLIAT
KYGPALYNSSSILQSDRTGPIMGYIVFIRLIDEEFMAELSKYTAAGIEMSVVTASDDVAQIPYLGADFELTKLHAISERL
VRNIDGQPLIKFTLYHTDAEPSPILGSDIYILLAEMSVLLLLAYYLYSYFLVHPVRKLAVDIEEMAKSREIKKLKHRYPI
TELVNVATHFNALMGTIQEQTKQLNEQVYIDKLTNIPNRRGFEQRLETYCQLLARQQIGFTLIIADVDHFKEYNDTLGHL
AGDEALVKVAQTLSQQFYRADDICARFGGEEFIMLYRDIPDEPLQRKLDAMLQSFEDLAFPHPSSKTAKYVTVSLGVCKV
LAVEDFEFKSDANIIGRQAALLADKALYQAKACGRNQYKKVSLLIDEIEALESNHPSARP

Sequences:

>Translated_540_residues
MFASAVFAYRIWVQAPAIERSLLKVSEQELVALNFAFEQMSKPLHTINYDYAVWDRTYSYMKSNSVADKRYYEQHEYPDD
TFKSLKVDGVFIFDNQNNVVFNKGFRHNSEHEKLQFDLMNFAESPENKLLSPLNKIALPPQEHPFSHPSSVPTKSGLIAT
KYGPALYNSSSILQSDRTGPIMGYIVFIRLIDEEFMAELSKYTAAGIEMSVVTASDDVAQIPYLGADFELTKLHAISERL
VRNIDGQPLIKFTLYHTDAEPSPILGSDIYILLAEMSVLLLLAYYLYSYFLVHPVRKLAVDIEEMAKSREIKKLKHRYPI
TELVNVATHFNALMGTIQEQTKQLNEQVYIDKLTNIPNRRGFEQRLETYCQLLARQQIGFTLIIADVDHFKEYNDTLGHL
AGDEALVKVAQTLSQQFYRADDICARFGGEEFIMLYRDIPDEPLQRKLDAMLQSFEDLAFPHPSSKTAKYVTVSLGVCKV
LAVEDFEFKSDANIIGRQAALLADKALYQAKACGRNQYKKVSLLIDEIEALESNHPSARP
>Mature_540_residues
MFASAVFAYRIWVQAPAIERSLLKVSEQELVALNFAFEQMSKPLHTINYDYAVWDRTYSYMKSNSVADKRYYEQHEYPDD
TFKSLKVDGVFIFDNQNNVVFNKGFRHNSEHEKLQFDLMNFAESPENKLLSPLNKIALPPQEHPFSHPSSVPTKSGLIAT
KYGPALYNSSSILQSDRTGPIMGYIVFIRLIDEEFMAELSKYTAAGIEMSVVTASDDVAQIPYLGADFELTKLHAISERL
VRNIDGQPLIKFTLYHTDAEPSPILGSDIYILLAEMSVLLLLAYYLYSYFLVHPVRKLAVDIEEMAKSREIKKLKHRYPI
TELVNVATHFNALMGTIQEQTKQLNEQVYIDKLTNIPNRRGFEQRLETYCQLLARQQIGFTLIIADVDHFKEYNDTLGHL
AGDEALVKVAQTLSQQFYRADDICARFGGEEFIMLYRDIPDEPLQRKLDAMLQSFEDLAFPHPSSKTAKYVTVSLGVCKV
LAVEDFEFKSDANIIGRQAALLADKALYQAKACGRNQYKKVSLLIDEIEALESNHPSARP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=37.7245508982036, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=33.1491712707182, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=207, Percent_Identity=30.9178743961353, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=32.2222222222222, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=34.2245989304813, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=183, Percent_Identity=31.6939890710383, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=28.3333333333333, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=250, Percent_Identity=26.8, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=30.1775147928994, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787541, Length=188, Percent_Identity=27.6595744680851, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 61543; Mature: 61543

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFASAVFAYRIWVQAPAIERSLLKVSEQELVALNFAFEQMSKPLHTINYDYAVWDRTYSY
CCCHHHHHHHHHEECCHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
MKSNSVADKRYYEQHEYPDDTFKSLKVDGVFIFDNQNNVVFNKGFRHNSEHEKLQFDLMN
HHCCCCHHHHHHHHCCCCCHHHHHEEECEEEEEECCCCEEEECCCCCCCCHHHHHHHHHH
FAESPENKLLSPLNKIALPPQEHPFSHPSSVPTKSGLIATKYGPALYNSSSILQSDRTGP
HHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHCCCCHHHCCCCCCC
IMGYIVFIRLIDEEFMAELSKYTAAGIEMSVVTASDDVAQIPYLGADFELTKLHAISERL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHH
VRNIDGQPLIKFTLYHTDAEPSPILGSDIYILLAEMSVLLLLAYYLYSYFLVHPVRKLAV
HHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIEEMAKSREIKKLKHRYPITELVNVATHFNALMGTIQEQTKQLNEQVYIDKLTNIPNRR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GFEQRLETYCQLLARQQIGFTLIIADVDHFKEYNDTLGHLAGDEALVKVAQTLSQQFYRA
CHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DDICARFGGEEFIMLYRDIPDEPLQRKLDAMLQSFEDLAFPHPSSKTAKYVTVSLGVCKV
HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEE
LAVEDFEFKSDANIIGRQAALLADKALYQAKACGRNQYKKVSLLIDEIEALESNHPSARP
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFASAVFAYRIWVQAPAIERSLLKVSEQELVALNFAFEQMSKPLHTINYDYAVWDRTYSY
CCCHHHHHHHHHEECCHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
MKSNSVADKRYYEQHEYPDDTFKSLKVDGVFIFDNQNNVVFNKGFRHNSEHEKLQFDLMN
HHCCCCHHHHHHHHCCCCCHHHHHEEECEEEEEECCCCEEEECCCCCCCCHHHHHHHHHH
FAESPENKLLSPLNKIALPPQEHPFSHPSSVPTKSGLIATKYGPALYNSSSILQSDRTGP
HHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHCCCCHHHCCCCCCC
IMGYIVFIRLIDEEFMAELSKYTAAGIEMSVVTASDDVAQIPYLGADFELTKLHAISERL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHH
VRNIDGQPLIKFTLYHTDAEPSPILGSDIYILLAEMSVLLLLAYYLYSYFLVHPVRKLAV
HHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIEEMAKSREIKKLKHRYPITELVNVATHFNALMGTIQEQTKQLNEQVYIDKLTNIPNRR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GFEQRLETYCQLLARQQIGFTLIIADVDHFKEYNDTLGHLAGDEALVKVAQTLSQQFYRA
CHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DDICARFGGEEFIMLYRDIPDEPLQRKLDAMLQSFEDLAFPHPSSKTAKYVTVSLGVCKV
HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEE
LAVEDFEFKSDANIIGRQAALLADKALYQAKACGRNQYKKVSLLIDEIEALESNHPSARP
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]