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The map label for this gene is dapD [H]

Identifier: 157962707

GI number: 157962707

Start: 3528009

End: 3528833

Strand: Direct

Name: dapD [H]

Synonym: Spea_2888

Alternate gene names: 157962707

Gene position: 3528009-3528833 (Clockwise)

Preceding gene: 157962706

Following gene: 157962708

Centisome position: 68.18

GC content: 47.03

Gene sequence:

>825_bases
ATGGAGGCTTTACGCCAACGAATTGAGGCGGCTTTTGAAGCGCGCGCAGAGATAACTCCGGCAACAGTTGAGCCAAGTGT
TCGCGCTGATGTTGAAAAAGCGATTGCCATGTTAGACACTGGCGAAGCGAGAGTTGCTGAAAAAATTAATGGCGAATGGC
ATGTTCACCAGTGGCTGAAAAAAGCGGTACTACTTTCATTCCGCATTTTCGACAACGGCGTAATTGAAGGCGCAGAAACC
AAATACTTCGACAAAGTACCAATGAAGTTTGCTGATTACGACGAAGCGCGTTTCCGTAAAGAAGCTATTCGTGTTGTACC
ACCAGCAGCGGTACGTAAGGGCTCATTTATTGGCAAGAACACAGTGCTAATGCCATCTTACGTTAACCTTGGTGCTTTTG
TTGATGAAGGCACTATGGTTGATACTTGGGCGACTGTTGGCTCTTGTGCTCAAATTGGTAAGAATGTTCACTTATCTGGC
GGTGTCGGGATCGGTGGCGTTTTAGAGCCTCTACAAGCCGGCCCTACCATTATTGAAGATAACTGTTTCATCGGTGCACG
CTCTGAAATCGTTGAAGGCGTTATCGTTGAAGAAGGCAGCGTTATCTCTATGGGCGTATATATCGGCCAAAGCACACGCA
TTTTTGACCGTGAAACAGGCGAAGTTCATTATGGCCGTGTTCCAGCAGGTTCTGTCGTTGTGGCCGGTAACCTACCCTCT
AAGTGTGGTACTTACAGCCTATACGCCGCCATTATCGTTAAGAAAGTTGATGCAAAAACCCGCGGCAAAGTGGGTATTAA
CGAGCTATTACGTATCGTAGACTAA

Upstream 100 bases:

>100_bases
CCGATGGCCAGCAACTAAATGACACGCAACAAAACACATTACGTGAAGCACTTATGAGTGCTTTATAGATTTATCATTAA
ACAAAATATGGGAGAAGTTA

Downstream 100 bases:

>100_bases
GCGCTTATAGCTAACCGCTAAGTTGACTCAAAAATCCCGCCTTAGGCGGGATTTTTCTTATTCTTTCACAATTGACACAC
TTTGACATCTACAGACACAC

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MEALRQRIEAAFEARAEITPATVEPSVRADVEKAIAMLDTGEARVAEKINGEWHVHQWLKKAVLLSFRIFDNGVIEGAET
KYFDKVPMKFADYDEARFRKEAIRVVPPAAVRKGSFIGKNTVLMPSYVNLGAFVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIFDRETGEVHYGRVPAGSVVVAGNLPS
KCGTYSLYAAIIVKKVDAKTRGKVGINELLRIVD

Sequences:

>Translated_274_residues
MEALRQRIEAAFEARAEITPATVEPSVRADVEKAIAMLDTGEARVAEKINGEWHVHQWLKKAVLLSFRIFDNGVIEGAET
KYFDKVPMKFADYDEARFRKEAIRVVPPAAVRKGSFIGKNTVLMPSYVNLGAFVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIFDRETGEVHYGRVPAGSVVVAGNLPS
KCGTYSLYAAIIVKKVDAKTRGKVGINELLRIVD
>Mature_274_residues
MEALRQRIEAAFEARAEITPATVEPSVRADVEKAIAMLDTGEARVAEKINGEWHVHQWLKKAVLLSFRIFDNGVIEGAET
KYFDKVPMKFADYDEARFRKEAIRVVPPAAVRKGSFIGKNTVLMPSYVNLGAFVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIFDRETGEVHYGRVPAGSVVVAGNLPS
KCGTYSLYAAIIVKKVDAKTRGKVGINELLRIVD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=274, Percent_Identity=81.7518248175183, Blast_Score=443, Evalue=1e-126,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29640; Mature: 29640

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALRQRIEAAFEARAEITPATVEPSVRADVEKAIAMLDTGEARVAEKINGEWHVHQWLK
CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHH
KAVLLSFRIFDNGVIEGAETKYFDKVPMKFADYDEARFRKEAIRVVPPAAVRKGSFIGKN
HHHHHHHEEECCCEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCC
TVLMPSYVNLGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
EEECCCCCCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEEEC
NCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIFDRETGEVHYGRVPAGSVVVAGNLPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEEECCCCC
KCGTYSLYAAIIVKKVDAKTRGKVGINELLRIVD
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MEALRQRIEAAFEARAEITPATVEPSVRADVEKAIAMLDTGEARVAEKINGEWHVHQWLK
CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHH
KAVLLSFRIFDNGVIEGAETKYFDKVPMKFADYDEARFRKEAIRVVPPAAVRKGSFIGKN
HHHHHHHEEECCCEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCC
TVLMPSYVNLGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
EEECCCCCCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEEEC
NCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIFDRETGEVHYGRVPAGSVVVAGNLPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEEECCCCC
KCGTYSLYAAIIVKKVDAKTRGKVGINELLRIVD
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA