| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is glnD [H]
Identifier: 157962706
GI number: 157962706
Start: 3525421
End: 3527976
Strand: Direct
Name: glnD [H]
Synonym: Spea_2887
Alternate gene names: 157962706
Gene position: 3525421-3527976 (Clockwise)
Preceding gene: 157962705
Following gene: 157962707
Centisome position: 68.13
GC content: 45.23
Gene sequence:
>2556_bases ATGAATAGTGCTCAATCTGCCAAAAACGCTTTAATCGACTTAAACAAAACGATACTGGAAAGCTTTAACGCAAAATCAGA TATTCGCTCGATAGTGAGTACTCGCTGTCAACATGTCGATAAGCTACTTCAGCAGCAATGGAGTGCGCACAATCTACAAC AATACCCCATAGCTCTGGTTGCCGTAGGCGGCTATGGACGAGGAGAGCTACATCCTCAATCCGATGTGGATCTACTGTTT TTGACAGAAGGCGAGTTATCTCATGACGCCGAACAGGCATTAAGTGCCTTCATCGCCTTTATTTGGGATGCGGGGCTAGA GGTAGGCCATAGCGTTCGCAGTATTGAAGAAACGTTAGAACAAGGCCGCGCCGATATCACTGTTGCGACCAATCTACTCG AGTCGCGCCTTTTATGCGGCCCTCAAGCCCTATTCACCCTACTCTATCGCAATATTCGGCAAGATAATTTTTGGCCAAGT AGTGATTTTTATGTTGCCAAAAAAAATGAGCAAATGGCCCGACATAACCGAGCCAATGCATTTGACTTAGAACCGAATTT AAAAAGTTGCCCTGGCGGCCTTAGAGATATTCAGACTGTCGCTTGGGTCGCCATGCGTCACTTCAATGCTGAAAAGTTTG AAGAGTTGGTTTACCACGGCTTTTTAGACCCTATCGAACTCGATGAACTGCTAGAGGCGCAAGACTTTTTATGGCAACTG CGCTGTTCACTGCATTTAGTTTCAGGACGGGACGAAAACCGGCTATTGTTTGATCTACAGCCTCAAGTCGCCAAGTTGAT GGGCTATGAAGATGGTACCCAATTGGCAGTTGAACAGATGATGAAGAACTATTACCGCACCGTAAGGCGCGTAATGGAGC TCAATCAGATGCTGCTTCAGCTGTTCAAACGCGCCACTTTAGGTCATATCAAAGCGCTCGAAGTTGTACCAATCGATGAT AATTTCCAACGACGTGGAAAATTCATAGAAAGCCTAAGCAGTGAACTGTTTGATAACCCTGAAAACATCTTAAACCTGTT TCTGTGTGTGGCTAAGAACTCAAACATTCAAGCTATCTATGCAGTCACATTACGCAGTTTGCGCCGCGCACGACGTGCCC AGCCTCAGGCACTAATGTATCACGACTCTTGCCGTCAGTTGTTTATGCAGATCCTGCGTCACCCTCGCGGTATCGTGGCA CTTTCTCTTATGCATAAACACGGCGTACTGTCGGCATACCTCCCGGCTTGGCGTGCGATCGAAGGTCAGATGCAATTTGA CCTATTCCATGCCTATACCGTTGACGAGCATACCCATAGATTACTACTGAACATCGAAAGTTTTTCTCAGCCGGATCAGA AAGAAGAGTTTCCTCTAGGTTCAGTACTGATAAACCAATTGCCTAAGAAAGGCTTATTGGTACTGGCAGCAATTTTTCAC GACATTGCCAAAGGTCGCGGTGGCGATCACAGCAAGCTTGGTGCAACTGATGCGCTTGATTTTTGCAAGTTACATGGAAT GAACGATCATGATGGTCGCTTAGTCAGCTGGTTAGTTGAAAATCACCTAGTGATGTCTGTTACTGCCCAGCGCCGTGATA TTTCCGATCCCGATGTGGTTGCAGATTTTGCTGAACGTGTACGCGATGCGGTGCATTTAAGTTACCTATATTGTTTAACC GTGGCAGATATCTGTGCCACCAACGAGCGAACCTGGAACAGCTGGAAAGGTTCACTACTACGTGATCTTTATTTTTCAAC TCAGAGAGTCCTCTCTCGAGGCAAAGAAAAGCCAGTCGATATCCGCGCTCGGGTGCGTGAACACCAGGCTAAAGCGAAGA AAGAGTTACTGCGACGCGGCATCAAAGAGAAAGATCTAGACGCGTTATGGCAACGTTTTAAAGCCGATTATTTTCTGCGT AGCCAACCTAATCAGATTGCTTGGCATGCAGAAGCCATCATCAAGCATAAGCAAAATGAAACCTTAGTTCTGATCTCTAA ACATGTGACGCGCGGCGGTACTGAGCTGTTTGTCTATGGCAAAGATAAACCCAAGCTATTTGCCACCGTGATGGCAATAT TAGATAATAAAAATATTACGGTTCATGACGCTAGTATCATGACTTCCAAAGACAACTATGCACTAGACTCTTTTGTTATT TTGGAACAAGATGGCGAGCCAGTATCGCAACTGTCTCGGATCCAAGGGATCAAGAAGACGTTAATAAAAGCTTTAAGTAA TGAAACGCCTAAGTTGCCAAAATTTAGAAATCTTTCAAGAAAGATGAAACCTTTTAAAGTTGCAACCCAAGTGAGTTTCC CTACAACCCGTAGCCATGGTAAAAGTATGATGGAGCTCATTGCTCTCGACTCCCCAGGGTTACTAGCCAGAGTCGGTGAA GTATTTTATCGCTGTGAAGTGACGTTACTCGCGGCAAAAATCACCACCATTGGTGAAAGAGCTGAAGATTTCTTTTTGTT GCAAAGCGCCGATGGCCAGCAACTAAATGACACGCAACAAAACACATTACGTGAAGCACTTATGAGTGCTTTATAG
Upstream 100 bases:
>100_bases TAATGCCCAGCTAAATATTAATCATGATAAAGCCCTTTAAATTCGTGGTTTTTGCATAGATAATCGTTGCCAACGGATCC GTTCTCGAAGAAGAGATTTG
Downstream 100 bases:
>100_bases ATTTATCATTAAACAAAATATGGGAGAAGTTAATGGAGGCTTTACGCCAACGAATTGAGGCGGCTTTTGAAGCGCGCGCA GAGATAACTCCGGCAACAGT
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 851; Mature: 851
Protein sequence:
>851_residues MNSAQSAKNALIDLNKTILESFNAKSDIRSIVSTRCQHVDKLLQQQWSAHNLQQYPIALVAVGGYGRGELHPQSDVDLLF LTEGELSHDAEQALSAFIAFIWDAGLEVGHSVRSIEETLEQGRADITVATNLLESRLLCGPQALFTLLYRNIRQDNFWPS SDFYVAKKNEQMARHNRANAFDLEPNLKSCPGGLRDIQTVAWVAMRHFNAEKFEELVYHGFLDPIELDELLEAQDFLWQL RCSLHLVSGRDENRLLFDLQPQVAKLMGYEDGTQLAVEQMMKNYYRTVRRVMELNQMLLQLFKRATLGHIKALEVVPIDD NFQRRGKFIESLSSELFDNPENILNLFLCVAKNSNIQAIYAVTLRSLRRARRAQPQALMYHDSCRQLFMQILRHPRGIVA LSLMHKHGVLSAYLPAWRAIEGQMQFDLFHAYTVDEHTHRLLLNIESFSQPDQKEEFPLGSVLINQLPKKGLLVLAAIFH DIAKGRGGDHSKLGATDALDFCKLHGMNDHDGRLVSWLVENHLVMSVTAQRRDISDPDVVADFAERVRDAVHLSYLYCLT VADICATNERTWNSWKGSLLRDLYFSTQRVLSRGKEKPVDIRARVREHQAKAKKELLRRGIKEKDLDALWQRFKADYFLR SQPNQIAWHAEAIIKHKQNETLVLISKHVTRGGTELFVYGKDKPKLFATVMAILDNKNITVHDASIMTSKDNYALDSFVI LEQDGEPVSQLSRIQGIKKTLIKALSNETPKLPKFRNLSRKMKPFKVATQVSFPTTRSHGKSMMELIALDSPGLLARVGE VFYRCEVTLLAAKITTIGERAEDFFLLQSADGQQLNDTQQNTLREALMSAL
Sequences:
>Translated_851_residues MNSAQSAKNALIDLNKTILESFNAKSDIRSIVSTRCQHVDKLLQQQWSAHNLQQYPIALVAVGGYGRGELHPQSDVDLLF LTEGELSHDAEQALSAFIAFIWDAGLEVGHSVRSIEETLEQGRADITVATNLLESRLLCGPQALFTLLYRNIRQDNFWPS SDFYVAKKNEQMARHNRANAFDLEPNLKSCPGGLRDIQTVAWVAMRHFNAEKFEELVYHGFLDPIELDELLEAQDFLWQL RCSLHLVSGRDENRLLFDLQPQVAKLMGYEDGTQLAVEQMMKNYYRTVRRVMELNQMLLQLFKRATLGHIKALEVVPIDD NFQRRGKFIESLSSELFDNPENILNLFLCVAKNSNIQAIYAVTLRSLRRARRAQPQALMYHDSCRQLFMQILRHPRGIVA LSLMHKHGVLSAYLPAWRAIEGQMQFDLFHAYTVDEHTHRLLLNIESFSQPDQKEEFPLGSVLINQLPKKGLLVLAAIFH DIAKGRGGDHSKLGATDALDFCKLHGMNDHDGRLVSWLVENHLVMSVTAQRRDISDPDVVADFAERVRDAVHLSYLYCLT VADICATNERTWNSWKGSLLRDLYFSTQRVLSRGKEKPVDIRARVREHQAKAKKELLRRGIKEKDLDALWQRFKADYFLR SQPNQIAWHAEAIIKHKQNETLVLISKHVTRGGTELFVYGKDKPKLFATVMAILDNKNITVHDASIMTSKDNYALDSFVI LEQDGEPVSQLSRIQGIKKTLIKALSNETPKLPKFRNLSRKMKPFKVATQVSFPTTRSHGKSMMELIALDSPGLLARVGE VFYRCEVTLLAAKITTIGERAEDFFLLQSADGQQLNDTQQNTLREALMSAL >Mature_851_residues MNSAQSAKNALIDLNKTILESFNAKSDIRSIVSTRCQHVDKLLQQQWSAHNLQQYPIALVAVGGYGRGELHPQSDVDLLF LTEGELSHDAEQALSAFIAFIWDAGLEVGHSVRSIEETLEQGRADITVATNLLESRLLCGPQALFTLLYRNIRQDNFWPS SDFYVAKKNEQMARHNRANAFDLEPNLKSCPGGLRDIQTVAWVAMRHFNAEKFEELVYHGFLDPIELDELLEAQDFLWQL RCSLHLVSGRDENRLLFDLQPQVAKLMGYEDGTQLAVEQMMKNYYRTVRRVMELNQMLLQLFKRATLGHIKALEVVPIDD NFQRRGKFIESLSSELFDNPENILNLFLCVAKNSNIQAIYAVTLRSLRRARRAQPQALMYHDSCRQLFMQILRHPRGIVA LSLMHKHGVLSAYLPAWRAIEGQMQFDLFHAYTVDEHTHRLLLNIESFSQPDQKEEFPLGSVLINQLPKKGLLVLAAIFH DIAKGRGGDHSKLGATDALDFCKLHGMNDHDGRLVSWLVENHLVMSVTAQRRDISDPDVVADFAERVRDAVHLSYLYCLT VADICATNERTWNSWKGSLLRDLYFSTQRVLSRGKEKPVDIRARVREHQAKAKKELLRRGIKEKDLDALWQRFKADYFLR SQPNQIAWHAEAIIKHKQNETLVLISKHVTRGGTELFVYGKDKPKLFATVMAILDNKNITVHDASIMTSKDNYALDSFVI LEQDGEPVSQLSRIQGIKKTLIKALSNETPKLPKFRNLSRKMKPFKVATQVSFPTTRSHGKSMMELIALDSPGLLARVGE VFYRCEVTLLAAKITTIGERAEDFFLLQSADGQQLNDTQQNTLREALMSAL
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=837, Percent_Identity=49.5818399044205, Blast_Score=803, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 96938; Mature: 96938
Theoretical pI: Translated: 8.15; Mature: 8.15
Prosite motif: PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSAQSAKNALIDLNKTILESFNAKSDIRSIVSTRCQHVDKLLQQQWSAHNLQQYPIALV CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE AVGGYGRGELHPQSDVDLLFLTEGELSHDAEQALSAFIAFIWDAGLEVGHSVRSIEETLE EECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QGRADITVATNLLESRLLCGPQALFTLLYRNIRQDNFWPSSDFYVAKKNEQMARHNRANA CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCCCCC FDLEPNLKSCPGGLRDIQTVAWVAMRHFNAEKFEELVYHGFLDPIELDELLEAQDFLWQL EECCCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RCSLHLVSGRDENRLLFDLQPQVAKLMGYEDGTQLAVEQMMKNYYRTVRRVMELNQMLLQ HHHHEEECCCCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGHIKALEVVPIDDNFQRRGKFIESLSSELFDNPENILNLFLCVAKNSNIQAIY HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH AVTLRSLRRARRAQPQALMYHDSCRQLFMQILRHPRGIVALSLMHKHGVLSAYLPAWRAI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHHHHHH EGQMQFDLFHAYTVDEHTHRLLLNIESFSQPDQKEEFPLGSVLINQLPKKGLLVLAAIFH CCCEEEEEEEEEECCCCCCEEEEEEHHCCCCCCHHCCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGATDALDFCKLHGMNDHDGRLVSWLVENHLVMSVTAQRRDISDPDVV HHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEEEHHHCCCCCHHHH ADFAERVRDAVHLSYLYCLTVADICATNERTWNSWKGSLLRDLYFSTQRVLSRGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREHQAKAKKELLRRGIKEKDLDALWQRFKADYFLRSQPNQIAWHAEAIIKHKQNE HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHCCCCC TLVLISKHVTRGGTELFVYGKDKPKLFATVMAILDNKNITVHDASIMTSKDNYALDSFVI EEEEEEHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECEEEECCCCCCEEEEEE LEQDGEPVSQLSRIQGIKKTLIKALSNETPKLPKFRNLSRKMKPFKVATQVSFPTTRSHG EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHH KSMMELIALDSPGLLARVGEVFYRCEVTLLAAKITTIGERAEDFFLLQSADGQQLNDTQQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH NTLREALMSAL HHHHHHHHHCC >Mature Secondary Structure MNSAQSAKNALIDLNKTILESFNAKSDIRSIVSTRCQHVDKLLQQQWSAHNLQQYPIALV CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE AVGGYGRGELHPQSDVDLLFLTEGELSHDAEQALSAFIAFIWDAGLEVGHSVRSIEETLE EECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QGRADITVATNLLESRLLCGPQALFTLLYRNIRQDNFWPSSDFYVAKKNEQMARHNRANA CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCCCCC FDLEPNLKSCPGGLRDIQTVAWVAMRHFNAEKFEELVYHGFLDPIELDELLEAQDFLWQL EECCCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH RCSLHLVSGRDENRLLFDLQPQVAKLMGYEDGTQLAVEQMMKNYYRTVRRVMELNQMLLQ HHHHEEECCCCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGHIKALEVVPIDDNFQRRGKFIESLSSELFDNPENILNLFLCVAKNSNIQAIY HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH AVTLRSLRRARRAQPQALMYHDSCRQLFMQILRHPRGIVALSLMHKHGVLSAYLPAWRAI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCHHHHHHHHHHHH EGQMQFDLFHAYTVDEHTHRLLLNIESFSQPDQKEEFPLGSVLINQLPKKGLLVLAAIFH CCCEEEEEEEEEECCCCCCEEEEEEHHCCCCCCHHCCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGATDALDFCKLHGMNDHDGRLVSWLVENHLVMSVTAQRRDISDPDVV HHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEEEHHHCCCCCHHHH ADFAERVRDAVHLSYLYCLTVADICATNERTWNSWKGSLLRDLYFSTQRVLSRGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREHQAKAKKELLRRGIKEKDLDALWQRFKADYFLRSQPNQIAWHAEAIIKHKQNE HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHCCCCC TLVLISKHVTRGGTELFVYGKDKPKLFATVMAILDNKNITVHDASIMTSKDNYALDSFVI EEEEEEHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECEEEECCCCCCEEEEEE LEQDGEPVSQLSRIQGIKKTLIKALSNETPKLPKFRNLSRKMKPFKVATQVSFPTTRSHG EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHH KSMMELIALDSPGLLARVGEVFYRCEVTLLAAKITTIGERAEDFFLLQSADGQQLNDTQQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH NTLREALMSAL HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]