| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is uspF [C]
Identifier: 157962681
GI number: 157962681
Start: 3494769
End: 3495212
Strand: Direct
Name: uspF [C]
Synonym: Spea_2862
Alternate gene names: 157962681
Gene position: 3494769-3495212 (Clockwise)
Preceding gene: 157962680
Following gene: 157962683
Centisome position: 67.54
GC content: 45.95
Gene sequence:
>444_bases ATGGGTACTCACGATATCTTGTGTCCGATAGATTTTTCAGAAACATCGACTCATGCCTTAGGTTATGCCGTAGAGATGGC AAGCTTATATAAGGTCAACATTAGGCTATTAAATGTGATGTCCCTACCTAACGTTGCACCGGATTTTGGCATAGTGATAA ACGGCCCAACCGAGCAGTTTCAAGATCCTGAAGCCTATGCCAACGATAAGATAAAACAGATTGTGGCAGAGGTGCGAGAG CAAATGCCTAGAGGGTTAATGGTACATACCAACGTTCGCAGTGGCGGCGTAGTCGAGCAAATTTTAGAGGAAGCTGACGA GCAAAAAGTGGGCATGATAGTGATTGCTAGCAATGGTTTAACAGGCCTGTCTCACCTGTTAAACCCCAACGTCGCCGAGG CCATCGCCAATCAGGCTAAGTGTCCTGTTCTCGTCGTTAAATAA
Upstream 100 bases:
>100_bases CATGTATCCGCCTATATTTAAGGCTTATGTTTAAGACTTATGTCTACGGCTTGTGGTTACGGCTTAGATTTTCCAATACT TGGTTTTTTATGGAGGGGTT
Downstream 100 bases:
>100_bases TCCTATCTACTAGCATGCATTAATGATGCTTTGTAGCCAGCTTAAAGGCTAAGGCTTATCACTTAAGGTTAGGACATAAC ACTGCATACTTAATAAAAGA
Product: UspA domain-containing protein
Products: NA
Alternate protein names: Universal Stress Protein; UspA Domain Protein; Universal Stress Protein Family; Universal Stress Protein UspA; Universal Stress Family Protein
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MGTHDILCPIDFSETSTHALGYAVEMASLYKVNIRLLNVMSLPNVAPDFGIVINGPTEQFQDPEAYANDKIKQIVAEVRE QMPRGLMVHTNVRSGGVVEQILEEADEQKVGMIVIASNGLTGLSHLLNPNVAEAIANQAKCPVLVVK
Sequences:
>Translated_147_residues MGTHDILCPIDFSETSTHALGYAVEMASLYKVNIRLLNVMSLPNVAPDFGIVINGPTEQFQDPEAYANDKIKQIVAEVRE QMPRGLMVHTNVRSGGVVEQILEEADEQKVGMIVIASNGLTGLSHLLNPNVAEAIANQAKCPVLVVK >Mature_146_residues GTHDILCPIDFSETSTHALGYAVEMASLYKVNIRLLNVMSLPNVAPDFGIVINGPTEQFQDPEAYANDKIKQIVAEVREQ MPRGLMVHTNVRSGGVVEQILEEADEQKVGMIVIASNGLTGLSHLLNPNVAEAIANQAKCPVLVVK
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15923; Mature: 15791
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTHDILCPIDFSETSTHALGYAVEMASLYKVNIRLLNVMSLPNVAPDFGIVINGPTEQF CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEECCCHHHH QDPEAYANDKIKQIVAEVREQMPRGLMVHTNVRSGGVVEQILEEADEQKVGMIVIASNGL CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCC TGLSHLLNPNVAEAIANQAKCPVLVVK HHHHHHCCCCHHHHHHCCCCCCEEEEC >Mature Secondary Structure GTHDILCPIDFSETSTHALGYAVEMASLYKVNIRLLNVMSLPNVAPDFGIVINGPTEQF CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEECCCHHHH QDPEAYANDKIKQIVAEVREQMPRGLMVHTNVRSGGVVEQILEEADEQKVGMIVIASNGL CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCC TGLSHLLNPNVAEAIANQAKCPVLVVK HHHHHHCCCCHHHHHHCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA