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The map label for this gene is pal [H]

Identifier: 157962384

GI number: 157962384

Start: 3122785

End: 3123324

Strand: Reverse

Name: pal [H]

Synonym: Spea_2563

Alternate gene names: 157962384

Gene position: 3123324-3122785 (Counterclockwise)

Preceding gene: 157962385

Following gene: 157962383

Centisome position: 60.36

GC content: 43.7

Gene sequence:

>540_bases
ATGGATCTGAATAAGCTATTTAAAGCCATGTTAGTCGTACTTCCTATTATGGCTATCAGCGCCTGTAGCTCAACTTCTGA
GTCTGAAACGGATGCAACGAGCTCTACTGAGTCGTCTTCATCGAGTGAATATGCTAACAATGGCGTTGAAACAGGAGGTG
TTGCACCTGTATTGACTCCACAGGAGCAGCAACGCCTTAAGTATCAAGAGTTGAGAAAAGAACACATCATCTATTTTGAT
TTTGATCGTAGCTCGGTTTCTCAACAGTTCGCTGAGATTTTGGATGCTCATGGTGACTATCTTGTTGAGCACCCAAATGT
TCGAGTGATGATTGAAGGTCATGCTGATGAGCGTGGTACACCAGAATATAATATTGCACTAGGTGAGCGCCGCGCGAAAG
CCGTTGCAAAATACCTACAAGGCATGGGTGTTCAACCAAGCCAAATGAGCATCGTGAGTTATGGTGAAGAGAAACCACTG
GATTTTTCTCGCTCAGATGATGGTTTTGCTAAAAACCGTCGTGCAGTACTCGTTTATTAA

Upstream 100 bases:

>100_bases
GGATGGACGTTTTAAAGCAAGACTGCCAGCTGGGCAGGGTGAAGTTAAATCACCATCTTGGTCACCATTTCTCTAACTAT
AAAGATTAAGGATTTAAAAA

Downstream 100 bases:

>100_bases
TAGCACTGGTAAAAGGTTTACCTTATGAAACACGCCGTTTTATCAGCGGCAATTATCCTAGTTGCAGGTTCTGCTTACGC
AGCACCTGCTCCTGTTGAGG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTPQEQQRLKYQELRKEHIIYFD
FDRSSVSQQFAEILDAHGDYLVEHPNVRVMIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPL
DFSRSDDGFAKNRRAVLVY

Sequences:

>Translated_179_residues
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTPQEQQRLKYQELRKEHIIYFD
FDRSSVSQQFAEILDAHGDYLVEHPNVRVMIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPL
DFSRSDDGFAKNRRAVLVY
>Mature_179_residues
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTPQEQQRLKYQELRKEHIIYFD
FDRSSVSQQFAEILDAHGDYLVEHPNVRVMIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPL
DFSRSDDGFAKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=179, Percent_Identity=47.4860335195531, Blast_Score=170, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19874; Mature: 19874

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
QEQQRLKYQELRKEHIIYFDFDRSSVSQQFAEILDAHGDYLVEHPNVRVMIEGHADERGT
CHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCC
PEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPLDFSRSDDGFAKNRRAVLVY
CCEEEEECHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MDLNKLFKAMLVVLPIMAISACSSTSESETDATSSTESSSSSEYANNGVETGGVAPVLTP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
QEQQRLKYQELRKEHIIYFDFDRSSVSQQFAEILDAHGDYLVEHPNVRVMIEGHADERGT
CHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCC
PEYNIALGERRAKAVAKYLQGMGVQPSQMSIVSYGEEKPLDFSRSDDGFAKNRRAVLVY
CCEEEEECHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]