Click here to switch to the map view.

The map label for this gene is ybgF [H]

Identifier: 157962383

GI number: 157962383

Start: 3122035

End: 3122760

Strand: Reverse

Name: ybgF [H]

Synonym: Spea_2562

Alternate gene names: 157962383

Gene position: 3122760-3122035 (Counterclockwise)

Preceding gene: 157962384

Following gene: 157962382

Centisome position: 60.35

GC content: 42.15

Gene sequence:

>726_bases
ATGAAACACGCCGTTTTATCAGCGGCAATTATCCTAGTTGCAGGTTCTGCTTACGCAGCACCTGCTCCTGTTGAGGATAT
TGCTGGTGGCTCTACAGACGATAGAGTTGCTCGTTTAGAGCGAGTTATTAAAGCTAAGCAACAAAGCGAATTTCAAATGC
AGCAGCGTTTAGAAACATTGCAGCAAGAAGTTCTAGATTTACGCGGACTAAGTGAACAGCAGTCATATCAAATTGAGCAG
ATGTTACAAAGACAGCGCCAATTATATGAAGACATAGCTAACCTCTCTTCAAAGCCTGCCAATGCAGTCGTAGTTGATAC
GACTAGTAGCACACCTTCTGTATCTTCAAGCCTAGGTGAAACTGCAAGCTATGAGCAAGCGGTCAATTTAGTGTTGAAAG
AGAAAAAGTACGAAGCTGCTATTCCTGCTTTTGCACAATTTATCCAGCGTTACCCAAATTCTAGCTACGCACCTAATGCT
AATTATTGGTTAGGTCAGCTACTTTATAATAAGAGTGAGTTTGACGGAGCCTCTAAAGCTTTTACTACTGTTGTTGAAAA
ATACACCGATTCGAGCAAGCGTGGCGAAAGCTTAGTCAAACTGGGTATGATTGCAGAAAAGACGGGAGATAAAGCTAAAG
CTAAAGCTTATTATCAAAAAGTCACTCAGGAATATGCGAACAGCGCTGCAGCCCGAATTGCGTTGCAGCAACTTTCATCA
CTTTGA

Upstream 100 bases:

>100_bases
TGAAGAGAAACCACTGGATTTTTCTCGCTCAGATGATGGTTTTGCTAAAAACCGTCGTGCAGTACTCGTTTATTAATAGC
ACTGGTAAAAGGTTTACCTT

Downstream 100 bases:

>100_bases
TGCTGATTTATTCATAAAACAATCTCTTAGATTGTTTTTCAGACAAACGCGGTGAAATGGTAAATTTGCGCTTGCATGCG
AAGATGAAAAAGGTATTATA

Product: Tol-Pal system YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKHAVLSAAIILVAGSAYAAPAPVEDIAGGSTDDRVARLERVIKAKQQSEFQMQQRLETLQQEVLDLRGLSEQQSYQIEQ
MLQRQRQLYEDIANLSSKPANAVVVDTTSSTPSVSSSLGETASYEQAVNLVLKEKKYEAAIPAFAQFIQRYPNSSYAPNA
NYWLGQLLYNKSEFDGASKAFTTVVEKYTDSSKRGESLVKLGMIAEKTGDKAKAKAYYQKVTQEYANSAAARIALQQLSS
L

Sequences:

>Translated_241_residues
MKHAVLSAAIILVAGSAYAAPAPVEDIAGGSTDDRVARLERVIKAKQQSEFQMQQRLETLQQEVLDLRGLSEQQSYQIEQ
MLQRQRQLYEDIANLSSKPANAVVVDTTSSTPSVSSSLGETASYEQAVNLVLKEKKYEAAIPAFAQFIQRYPNSSYAPNA
NYWLGQLLYNKSEFDGASKAFTTVVEKYTDSSKRGESLVKLGMIAEKTGDKAKAKAYYQKVTQEYANSAAARIALQQLSS
L
>Mature_241_residues
MKHAVLSAAIILVAGSAYAAPAPVEDIAGGSTDDRVARLERVIKAKQQSEFQMQQRLETLQQEVLDLRGLSEQQSYQIEQ
MLQRQRQLYEDIANLSSKPANAVVVDTTSSTPSVSSSLGETASYEQAVNLVLKEKKYEAAIPAFAQFIQRYPNSSYAPNA
NYWLGQLLYNKSEFDGASKAFTTVVEKYTDSSKRGESLVKLGMIAEKTGDKAKAKAYYQKVTQEYANSAAARIALQQLSS
L

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=259, Percent_Identity=35.5212355212355, Blast_Score=141, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26519; Mature: 26519

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHAVLSAAIILVAGSAYAAPAPVEDIAGGSTDDRVARLERVIKAKQQSEFQMQQRLETL
CCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQEVLDLRGLSEQQSYQIEQMLQRQRQLYEDIANLSSKPANAVVVDTTSSTPSVSSSLGE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCC
TASYEQAVNLVLKEKKYEAAIPAFAQFIQRYPNSSYAPNANYWLGQLLYNKSEFDGASKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHCCCHHHH
FTTVVEKYTDSSKRGESLVKLGMIAEKTGDKAKAKAYYQKVTQEYANSAAARIALQQLSS
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MKHAVLSAAIILVAGSAYAAPAPVEDIAGGSTDDRVARLERVIKAKQQSEFQMQQRLETL
CCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQEVLDLRGLSEQQSYQIEQMLQRQRQLYEDIANLSSKPANAVVVDTTSSTPSVSSSLGE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCC
TASYEQAVNLVLKEKKYEAAIPAFAQFIQRYPNSSYAPNANYWLGQLLYNKSEFDGASKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHCCCHHHH
FTTVVEKYTDSSKRGESLVKLGMIAEKTGDKAKAKAYYQKVTQEYANSAAARIALQQLSS
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]