Click here to switch to the map view.

The map label for this gene is yqfA [H]

Identifier: 157962206

GI number: 157962206

Start: 2908535

End: 2909284

Strand: Direct

Name: yqfA [H]

Synonym: Spea_2385

Alternate gene names: 157962206

Gene position: 2908535-2909284 (Clockwise)

Preceding gene: 157962198

Following gene: 157962209

Centisome position: 56.21

GC content: 41.07

Gene sequence:

>750_bases
ATGAAAGATGTTACACTGCCCCTAATTGTGGTCAAACCAGAAGTCTTTTATACGATGGCAGTAGAACAAGCGACAGCTTC
AGACAATCAAGGTTCTCATCCTACAGCTAAGAAAATAACAGTGGCTAGCTACTGTGCTAGAGAAGAGCTGGCAAACAGTA
TAAGCCATGGTATCGGTGTCATTGTCGGTATTGTCGGGCTTATTCTGTGTTTACTAAAGGGCTTTGATCACTTAAGTTTT
GTTCAGTTAACGGGTGTGGTTGTTTACTGCAGTAGTATTATTTTGCTTTTTCTGTGCTCGACCTTATATCACAGCGCGAC
ATCACCAATGACCAAACATAGGCTAAAAATTGCCGACCACTGCGCTATCTATCTGTTGATCGCAGGTACCTATACACCGC
TGATGCTTATCACGTTAACCAGCAGCGAAGCCGATTGGATTCTGATTGCTATCTGGTCACTGGCAATTGGTGGAGTATTA
TTTAAAACTCTATTTATTGGACGTTTTAAGGCCTTCAGTCTGGTGCTGTATCTGGTGATGGGCTGGCTTTGTGTAACTGT
GATGCAAGACTTAATTGCTAACATGTCAGATCTTGGCTTTAATCTGTTAATTGCAGGCGGATTATTTTATAGCTTAGGGG
TTATTTTTTATGTCGCTAAACGTATCCCTTTTAATCATGCTATTTGGCACCTATTTGTATTAGGCGGCGCAGTTTGTCAC
TTTCTGTGTATCTATCTAACAGTGATTTAA

Upstream 100 bases:

>100_bases
ACTACTAGGCTACTGTTTCAGGGTTACATGCAAAATAAATTTGAAACTAGACGACAAAAAACTTAGCTTACACGTGTTCG
CTTAAACTCTAGCTTTTCCA

Downstream 100 bases:

>100_bases
TTATTCTGTAATCAAGGATTACGTGCACTCTTTGCTCAATAGTTACTATTAAAGTGAGCTCACTGACAAAATGCTTGAAA
TGCTTCAGTGAGTCGCTCGG

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKDVTLPLIVVKPEVFYTMAVEQATASDNQGSHPTAKKITVASYCAREELANSISHGIGVIVGIVGLILCLLKGFDHLSF
VQLTGVVVYCSSIILLFLCSTLYHSATSPMTKHRLKIADHCAIYLLIAGTYTPLMLITLTSSEADWILIAIWSLAIGGVL
FKTLFIGRFKAFSLVLYLVMGWLCVTVMQDLIANMSDLGFNLLIAGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVCH
FLCIYLTVI

Sequences:

>Translated_249_residues
MKDVTLPLIVVKPEVFYTMAVEQATASDNQGSHPTAKKITVASYCAREELANSISHGIGVIVGIVGLILCLLKGFDHLSF
VQLTGVVVYCSSIILLFLCSTLYHSATSPMTKHRLKIADHCAIYLLIAGTYTPLMLITLTSSEADWILIAIWSLAIGGVL
FKTLFIGRFKAFSLVLYLVMGWLCVTVMQDLIANMSDLGFNLLIAGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVCH
FLCIYLTVI
>Mature_249_residues
MKDVTLPLIVVKPEVFYTMAVEQATASDNQGSHPTAKKITVASYCAREELANSISHGIGVIVGIVGLILCLLKGFDHLSF
VQLTGVVVYCSSIILLFLCSTLYHSATSPMTKHRLKIADHCAIYLLIAGTYTPLMLITLTSSEADWILIAIWSLAIGGVL
FKTLFIGRFKAFSLVLYLVMGWLCVTVMQDLIANMSDLGFNLLIAGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVCH
FLCIYLTVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=221, Percent_Identity=30.316742081448, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI52630445, Length=206, Percent_Identity=32.0388349514563, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI154759277, Length=245, Percent_Identity=27.3469387755102, Blast_Score=75, Evalue=4e-14,
Organism=Escherichia coli, GI1789266, Length=213, Percent_Identity=53.9906103286385, Blast_Score=214, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI71996356, Length=217, Percent_Identity=33.1797235023041, Blast_Score=94, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24640324, Length=228, Percent_Identity=31.5789473684211, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 27299; Mature: 27299

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDVTLPLIVVKPEVFYTMAVEQATASDNQGSHPTAKKITVASYCAREELANSISHGIGV
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVGIVGLILCLLKGFDHLSFVQLTGVVVYCSSIILLFLCSTLYHSATSPMTKHRLKIADH
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
CAIYLLIAGTYTPLMLITLTSSEADWILIAIWSLAIGGVLFKTLFIGRFKAFSLVLYLVM
HHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLCVTVMQDLIANMSDLGFNLLIAGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVCH
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FLCIYLTVI
HHHHHHHHC
>Mature Secondary Structure
MKDVTLPLIVVKPEVFYTMAVEQATASDNQGSHPTAKKITVASYCAREELANSISHGIGV
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVGIVGLILCLLKGFDHLSFVQLTGVVVYCSSIILLFLCSTLYHSATSPMTKHRLKIADH
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
CAIYLLIAGTYTPLMLITLTSSEADWILIAIWSLAIGGVLFKTLFIGRFKAFSLVLYLVM
HHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLCVTVMQDLIANMSDLGFNLLIAGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVCH
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FLCIYLTVI
HHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]