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The map label for this gene is hlyB [H]

Identifier: 157960687

GI number: 157960687

Start: 1056566

End: 1058587

Strand: Reverse

Name: hlyB [H]

Synonym: Spea_0859

Alternate gene names: 157960687

Gene position: 1058587-1056566 (Counterclockwise)

Preceding gene: 157960688

Following gene: 157960679

Centisome position: 20.46

GC content: 46.39

Gene sequence:

>2022_bases
ATGAAGTTAAATGTAGCCACCAGGGTAATAGCTGGATTTACGGTCGTCACCATACTACTGCTAGTTCTAGGTGCAGTTTC
TTGGTTAACTAATAGCCAACTAAAGATAAGTACTCAAGTTCTGCAAGACTTAAGCCTACCAGCGCTAGAATCAAGTAACT
TACTTTCCCAGACACTCTCCGAACAGGAAAAACTGATCTTAGTGGCCTATCACAGCCAAGCTAACAGCGAGATCTCCGAG
ATAGACTCGCAATATTCGACTACTAATCAGACGTTTAATAGAGAGCTGACGAAACTTACCGATTTAGTGAGTAACAACTC
TGAACTAAATAACATTATTCAGACTCTCAAAACGCAATACACTCAATTCAATGCAACCAGCAATGAGATGATTGTCACCC
GCGAAGCCGAGCTCGTGATAAGTAAGAAGATAGCGAGTCAATATGACGATATCGAAATTGCAGCCGATGACAGCGCCTCT
CTGCTGCTTGATTTGATTGATCTTGAGATGAGTGAAGATGTAGTTGATCAAGAAGTCGCTGCCAACGCAAGTAACTTAGA
ACTCAGCTTTAGTAATATAGCCAGCACTAGTTTCGACCTTATCGGCAGCACAGATCTTGCTAAATTCGACACCATCTCAA
AAGAACTGGACTATATCGTTAGTGACACAAAGAGTAAGCTTAATTATGTCAGCAGCCACTGGGATGGTGTGGTCGATGCG
GAGCTCATTACAGAGATCAATACCGAAGCTACGAATGTCTTTAGCATGGTTCAAAGCAAGAACTCATTAATTGCATTAAA
ACGCCAAGAGCTTGAACTTCATAGTCGCGCAGCTGTTTTACTTACAGACGTCGAGCGAACTGCTGGTAATGTCAACGAAC
AGATGAAGGCGTTGACCACTAGCATAGAAACTATCTCTCGTGAAATCAGTAGCGAGGCCATTAATAACATAGATAGCGCC
AGCATGCGCACACTCGTGTTGATGCTGCTGGCCATTCTTGTTGCGATTGTCGTCAGTATTGCGGTAGTGCGCCCACTCAC
TCGCTCACTCGATAGAATTAACCACGCCTTAAATGTGCTGGCATCAGGAGATTTAACTCACAAGTTAGATGACTCCGGCC
ATGATGAGTTCGCTAAGTTGTCGGCAAACTGCAATAAACTGGTAGATAGCTTACGCAGTCTTATTCAAGGGATTTTGGAT
CGCTCAGATCAACTCGCAGCAGCAGCCGAGGAAACCTCGGCAATTACGGCGCAGACCACAGTCGGTATTCAAGAGCAGAA
GAGCCAAGTTGATCAAGTTGCTACCGCGACGACTCAACTAAGCTCTAGCGCGCAGCAGGTTAATGCGAGTGCCGATGAAG
CCCTTAGCCAAATAAAAGCGGCCGATGATGAAAGCCAGCATATGCGCCTAATTGCAAACGAAAATAAGCGTACTATTCTT
GCCCTAGCCGATGAAGTCGCTAAAGCCAGTGTAGTCATCAACAAGGTACATGCCGACAGCGCCTCCATTGGCTCCATACT
CGATGTCATTCGTGGTATTGCTGAGCAGACCAATCTGCTTGCTCTAAATGCTGCTATCGAAGCTGCGCGAGCTGGAGAGC
AAGGGCGAGGCTTTGCAGTAGTCGCCGATGAAGTACGTAGCCTTGCTTCTAGAACCCAAGACTCTACCCAAGAGATCCAG
CAGATGATCGAAGTTCTGCAACAAGGTACACAAGAAGCGGTATCGGCAATGGACTTAGGACGCTCTCAGGCTAGCTCTTG
CGTTGAAAAAACTGAACAAGCAAATAACGCACTGGAAAGTATTAGCGACGCTGTACATCGTGCTCATGACTCAGGAACAC
ATATTGTCCACGCCGCCCAAGAACAGAACCAAGTAAGCCAACAGGTGTCAGAGAAGCTTGAGCATATCGCGGCTATCTCA
GAAGAAACCTCAGCAGGGGCAGACCAAACGGCGCAATCTAGCCATCAGGTGGCCCAGCTAGCCGAAGAATTACAAGCCTC
GGTCAAAGAGTTTAAGGTTTAG

Upstream 100 bases:

>100_bases
AAGAGTTAAGCTATTGCAACATTAGGCCGATAGACTATTCGAGGCCCTTGTCAGGTCGGTACTGAGATTTAGATAAAAAT
AATAATAAAATGGAGCTCCT

Downstream 100 bases:

>100_bases
CCATTTAGTGAGCAGAGAAAACAAATAAAAAAGGCGCTATATCTAGCGCCTTTTTATATATTTAAAGCACTGGCCATACA
AGAGACAAAAAAATACTGGG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MKLNVATRVIAGFTVVTILLLVLGAVSWLTNSQLKISTQVLQDLSLPALESSNLLSQTLSEQEKLILVAYHSQANSEISE
IDSQYSTTNQTFNRELTKLTDLVSNNSELNNIIQTLKTQYTQFNATSNEMIVTREAELVISKKIASQYDDIEIAADDSAS
LLLDLIDLEMSEDVVDQEVAANASNLELSFSNIASTSFDLIGSTDLAKFDTISKELDYIVSDTKSKLNYVSSHWDGVVDA
ELITEINTEATNVFSMVQSKNSLIALKRQELELHSRAAVLLTDVERTAGNVNEQMKALTTSIETISREISSEAINNIDSA
SMRTLVLMLLAILVAIVVSIAVVRPLTRSLDRINHALNVLASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRSLIQGILD
RSDQLAAAAEETSAITAQTTVGIQEQKSQVDQVATATTQLSSSAQQVNASADEALSQIKAADDESQHMRLIANENKRTIL
ALADEVAKASVVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQ
QMIEVLQQGTQEAVSAMDLGRSQASSCVEKTEQANNALESISDAVHRAHDSGTHIVHAAQEQNQVSQQVSEKLEHIAAIS
EETSAGADQTAQSSHQVAQLAEELQASVKEFKV

Sequences:

>Translated_673_residues
MKLNVATRVIAGFTVVTILLLVLGAVSWLTNSQLKISTQVLQDLSLPALESSNLLSQTLSEQEKLILVAYHSQANSEISE
IDSQYSTTNQTFNRELTKLTDLVSNNSELNNIIQTLKTQYTQFNATSNEMIVTREAELVISKKIASQYDDIEIAADDSAS
LLLDLIDLEMSEDVVDQEVAANASNLELSFSNIASTSFDLIGSTDLAKFDTISKELDYIVSDTKSKLNYVSSHWDGVVDA
ELITEINTEATNVFSMVQSKNSLIALKRQELELHSRAAVLLTDVERTAGNVNEQMKALTTSIETISREISSEAINNIDSA
SMRTLVLMLLAILVAIVVSIAVVRPLTRSLDRINHALNVLASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRSLIQGILD
RSDQLAAAAEETSAITAQTTVGIQEQKSQVDQVATATTQLSSSAQQVNASADEALSQIKAADDESQHMRLIANENKRTIL
ALADEVAKASVVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQ
QMIEVLQQGTQEAVSAMDLGRSQASSCVEKTEQANNALESISDAVHRAHDSGTHIVHAAQEQNQVSQQVSEKLEHIAAIS
EETSAGADQTAQSSHQVAQLAEELQASVKEFKV
>Mature_673_residues
MKLNVATRVIAGFTVVTILLLVLGAVSWLTNSQLKISTQVLQDLSLPALESSNLLSQTLSEQEKLILVAYHSQANSEISE
IDSQYSTTNQTFNRELTKLTDLVSNNSELNNIIQTLKTQYTQFNATSNEMIVTREAELVISKKIASQYDDIEIAADDSAS
LLLDLIDLEMSEDVVDQEVAANASNLELSFSNIASTSFDLIGSTDLAKFDTISKELDYIVSDTKSKLNYVSSHWDGVVDA
ELITEINTEATNVFSMVQSKNSLIALKRQELELHSRAAVLLTDVERTAGNVNEQMKALTTSIETISREISSEAINNIDSA
SMRTLVLMLLAILVAIVVSIAVVRPLTRSLDRINHALNVLASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRSLIQGILD
RSDQLAAAAEETSAITAQTTVGIQEQKSQVDQVATATTQLSSSAQQVNASADEALSQIKAADDESQHMRLIANENKRTIL
ALADEVAKASVVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQ
QMIEVLQQGTQEAVSAMDLGRSQASSCVEKTEQANNALESISDAVHRAHDSGTHIVHAAQEQNQVSQQVSEKLEHIAAIS
EETSAGADQTAQSSHQVAQLAEELQASVKEFKV

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=335, Percent_Identity=33.7313432835821, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI2367378, Length=308, Percent_Identity=30.5194805194805, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1788195, Length=295, Percent_Identity=33.5593220338983, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1788194, Length=353, Percent_Identity=28.8951841359773, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789453, Length=328, Percent_Identity=29.2682926829268, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 72650; Mature: 72650

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNVATRVIAGFTVVTILLLVLGAVSWLTNSQLKISTQVLQDLSLPALESSNLLSQTLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHC
EQEKLILVAYHSQANSEISEIDSQYSTTNQTFNRELTKLTDLVSNNSELNNIIQTLKTQY
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TQFNATSNEMIVTREAELVISKKIASQYDDIEIAADDSASLLLDLIDLEMSEDVVDQEVA
HHCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ANASNLELSFSNIASTSFDLIGSTDLAKFDTISKELDYIVSDTKSKLNYVSSHWDGVVDA
CCCCCCEEEHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ELITEINTEATNVFSMVQSKNSLIALKRQELELHSRAAVLLTDVERTAGNVNEQMKALTT
HHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHEEHHHHHHCCHHHHHHHHHH
SIETISREISSEAINNIDSASMRTLVLMLLAILVAIVVSIAVVRPLTRSLDRINHALNVL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRSLIQGILDRSDQLAAAAEETSAITAQTT
HCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEHHHH
VGIQEQKSQVDQVATATTQLSSSAQQVNASADEALSQIKAADDESQHMRLIANENKRTIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHEEEEECCCCCEEH
ALADEVAKASVVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCEEE
VADEVRSLASRTQDSTQEIQQMIEVLQQGTQEAVSAMDLGRSQASSCVEKTEQANNALES
EHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ISDAVHRAHDSGTHIVHAAQEQNQVSQQVSEKLEHIAAISEETSAGADQTAQSSHQVAQL
HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AEELQASVKEFKV
HHHHHHHHHHHCC
>Mature Secondary Structure
MKLNVATRVIAGFTVVTILLLVLGAVSWLTNSQLKISTQVLQDLSLPALESSNLLSQTLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHC
EQEKLILVAYHSQANSEISEIDSQYSTTNQTFNRELTKLTDLVSNNSELNNIIQTLKTQY
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TQFNATSNEMIVTREAELVISKKIASQYDDIEIAADDSASLLLDLIDLEMSEDVVDQEVA
HHCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ANASNLELSFSNIASTSFDLIGSTDLAKFDTISKELDYIVSDTKSKLNYVSSHWDGVVDA
CCCCCCEEEHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ELITEINTEATNVFSMVQSKNSLIALKRQELELHSRAAVLLTDVERTAGNVNEQMKALTT
HHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHEEHHHHHHCCHHHHHHHHHH
SIETISREISSEAINNIDSASMRTLVLMLLAILVAIVVSIAVVRPLTRSLDRINHALNVL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRSLIQGILDRSDQLAAAAEETSAITAQTT
HCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEHHHH
VGIQEQKSQVDQVATATTQLSSSAQQVNASADEALSQIKAADDESQHMRLIANENKRTIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHEEEEECCCCCEEH
ALADEVAKASVVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCEEE
VADEVRSLASRTQDSTQEIQQMIEVLQQGTQEAVSAMDLGRSQASSCVEKTEQANNALES
EHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ISDAVHRAHDSGTHIVHAAQEQNQVSQQVSEKLEHIAAISEETSAGADQTAQSSHQVAQL
HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AEELQASVKEFKV
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]