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The map label for this gene is glxA [H]

Identifier: 157960642

GI number: 157960642

Start: 1011167

End: 1012198

Strand: Reverse

Name: glxA [H]

Synonym: Spea_0814

Alternate gene names: 157960642

Gene position: 1012198-1011167 (Counterclockwise)

Preceding gene: 157960644

Following gene: 157960641

Centisome position: 19.56

GC content: 49.81

Gene sequence:

>1032_bases
ATGTCTCATTCAAATATCGAAAACGCAGCCGCAAACGGCCAAGTTAACGCCCCAGATGTACGTTTTTTGCTACTGCCCTT
ACCCGAATTTAGCATGCTGCCATTCGCAGGTTTTCTGGATAAATTGCGCTTTTCTGCCGACGAGGAGGATTACAGTCAGC
AGCAATATTGCAGCTGGCAGATTGTCGGGTTAACGCCCTGCCACCAGCTATCCAGCAGCGGTGTTTCAGTTGAACTAACA
ACGACTGTGGATGAGATTGAATTAACCGATTATGACTATTTAGTCGTGTTTGGCGGCCGTAGTGCCCGAAGCTGTCAGCA
GCTACCCAAACAGTATCAAGATCTATTGCGCTTAGCCGCAGCGAAAGGAGTCACCTTAGTCAGTATTGATAATGCCTGCT
TTCTGTTTGCCGCAGCAGGTTTACTTGATAACCACAGTGTGGCGGTGCACTGGCGCCACGTACAAGAGTTTCGCACCGCC
TTTCCACGAATCGACATCCGCACCGAACAGCTCTATTGCATCGATAGGAAGCGGATCAGCTGCGCCGGAGGCAGTGCAGC
TATCGATCTCGCTGTTGAGCTATTAGCCCGCCATTGCGGCCGGACAAAGGCACTCAAGGGGCTGGCGGACATGCTTGTGG
ATGAAGCGAGAGAGCAAAGGCACCAACTCAAATCCCTCAATACCAATATTCAAATAAACAACACAGCAAGTCGCCACGTT
GGTCGAGCTATCAGCCTGATGCGCCAATTACTCGCCAGCTCTGACACAGTCGATGCACTGGCTGATAAATTAGCGATAAG
TCGCCGCCAACTGGATAGACAATTTAAAGACTGTTTTGGGCAGACGGCTCATGAATACTGGAGTGAAATGCGACTACAGC
ACCTGCATTGGCGAGTGGTAAATTCCGACCATAGCTTGCAATATTTGGCTGACGAAGTGGGTATTCAGGACGTGAGCTAT
CTGTGTAAGCTGTTTCGCAAGCGCTTCGGTTGCAGTCCTAATTCATTACGTAAGCCCAAGCTTTTCACCTAA

Upstream 100 bases:

>100_bases
TCTATGTTGGAGCGGATTATAGGAGAGGAGGAACTATCGAACCTGATACAATCAAGACAAAGCAAGGTAATATTTAGACG
TTACTGTACGAAGAAATCAT

Downstream 100 bases:

>100_bases
ACTATTTATCCATCATTAGAATAATTCATCTTGGCTCTGTTTATTAACAACACTTGATTTAGAACAAACTAGATTCATCT
CAGCGCTGTAGGTTATCCCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSHSNIENAAANGQVNAPDVRFLLLPLPEFSMLPFAGFLDKLRFSADEEDYSQQQYCSWQIVGLTPCHQLSSSGVSVELT
TTVDEIELTDYDYLVVFGGRSARSCQQLPKQYQDLLRLAAAKGVTLVSIDNACFLFAAAGLLDNHSVAVHWRHVQEFRTA
FPRIDIRTEQLYCIDRKRISCAGGSAAIDLAVELLARHCGRTKALKGLADMLVDEAREQRHQLKSLNTNIQINNTASRHV
GRAISLMRQLLASSDTVDALADKLAISRRQLDRQFKDCFGQTAHEYWSEMRLQHLHWRVVNSDHSLQYLADEVGIQDVSY
LCKLFRKRFGCSPNSLRKPKLFT

Sequences:

>Translated_343_residues
MSHSNIENAAANGQVNAPDVRFLLLPLPEFSMLPFAGFLDKLRFSADEEDYSQQQYCSWQIVGLTPCHQLSSSGVSVELT
TTVDEIELTDYDYLVVFGGRSARSCQQLPKQYQDLLRLAAAKGVTLVSIDNACFLFAAAGLLDNHSVAVHWRHVQEFRTA
FPRIDIRTEQLYCIDRKRISCAGGSAAIDLAVELLARHCGRTKALKGLADMLVDEAREQRHQLKSLNTNIQINNTASRHV
GRAISLMRQLLASSDTVDALADKLAISRRQLDRQFKDCFGQTAHEYWSEMRLQHLHWRVVNSDHSLQYLADEVGIQDVSY
LCKLFRKRFGCSPNSLRKPKLFT
>Mature_342_residues
SHSNIENAAANGQVNAPDVRFLLLPLPEFSMLPFAGFLDKLRFSADEEDYSQQQYCSWQIVGLTPCHQLSSSGVSVELTT
TVDEIELTDYDYLVVFGGRSARSCQQLPKQYQDLLRLAAAKGVTLVSIDNACFLFAAAGLLDNHSVAVHWRHVQEFRTAF
PRIDIRTEQLYCIDRKRISCAGGSAAIDLAVELLARHCGRTKALKGLADMLVDEAREQRHQLKSLNTNIQINNTASRHVG
RAISLMRQLLASSDTVDALADKLAISRRQLDRQFKDCFGQTAHEYWSEMRLQHLHWRVVNSDHSLQYLADEVGIQDVSYL
CKLFRKRFGCSPNSLRKPKLFT

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38719; Mature: 38587

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSNIENAAANGQVNAPDVRFLLLPLPEFSMLPFAGFLDKLRFSADEEDYSQQQYCSWQ
CCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCEE
IVGLTPCHQLSSSGVSVELTTTVDEIELTDYDYLVVFGGRSARSCQQLPKQYQDLLRLAA
EEECCCHHHHCCCCCEEEEEECCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
AKGVTLVSIDNACFLFAAAGLLDNHSVAVHWRHVQEFRTAFPRIDIRTEQLYCIDRKRIS
HCCEEEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCEEECCEEEEECCCEEE
CAGGSAAIDLAVELLARHCGRTKALKGLADMLVDEAREQRHQLKSLNTNIQINNTASRHV
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHH
GRAISLMRQLLASSDTVDALADKLAISRRQLDRQFKDCFGQTAHEYWSEMRLQHLHWRVV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
NSDHSLQYLADEVGIQDVSYLCKLFRKRFGCSPNSLRKPKLFT
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SHSNIENAAANGQVNAPDVRFLLLPLPEFSMLPFAGFLDKLRFSADEEDYSQQQYCSWQ
CCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCEE
IVGLTPCHQLSSSGVSVELTTTVDEIELTDYDYLVVFGGRSARSCQQLPKQYQDLLRLAA
EEECCCHHHHCCCCCEEEEEECCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
AKGVTLVSIDNACFLFAAAGLLDNHSVAVHWRHVQEFRTAFPRIDIRTEQLYCIDRKRIS
HCCEEEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCEEECCEEEEECCCEEE
CAGGSAAIDLAVELLARHCGRTKALKGLADMLVDEAREQRHQLKSLNTNIQINNTASRHV
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHH
GRAISLMRQLLASSDTVDALADKLAISRRQLDRQFKDCFGQTAHEYWSEMRLQHLHWRVV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
NSDHSLQYLADEVGIQDVSYLCKLFRKRFGCSPNSLRKPKLFT
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]