| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is eda [H]
Identifier: 157372733
GI number: 157372733
Start: 4986654
End: 4987295
Strand: Direct
Name: eda [H]
Synonym: Spro_4500
Alternate gene names: 157372733
Gene position: 4986654-4987295 (Clockwise)
Preceding gene: 157372732
Following gene: 157372738
Centisome position: 91.52
GC content: 60.9
Gene sequence:
>642_bases ATGAACAATTGGAAGACAAGCGCAGAGCAGATCCTGATGGCAGGACCGGTAGTCCCGGTGATCGTCATCAACAAACTGGA ACATGCTGTGCCGTTGGCGAAAGCCCTGGTCGCCGGGGGTGTGCGGGTATTGGAAGTGACACTGCGCACCGCCTGCGCGA TGGACGCGATCCGTGCGATTGCCAAAGAAGTGCCAGACGCGATTATCGGTGCCGGCACGGTTATTAATCCCCAGCAACTG CAGGAAGTCACCGACGCCGGCGCACAGTTCGCCATCAGCCCAGGCCTGACCGCCGATCTGCTGAAAGCGGCCACTGCCGG TTCGATCCCGTTGATTCCCGGTATCTGCACCGTGTCGGAACTGATGCTGGGCATGGATCACGGCCTGCGTGAGTTTAAAT TCTTCCCGGCTGAAGCCAACGGCGGCGTGAAAGCGCTGCAGGCCATCAGCGGCCCCTTCCCGCAGGTGCGCTTTTGCCCA ACCGGCGGCATCTCACCGAACAACTACCGTGACTATCTGGCGCTGAAAAGCGTGCTGTGCATCGGCGGCTCCTGGCTGGT ACCGGCAGATGCACTGGAAAGCGGTGACTACGCCCGCATTACCGAATTGGCGCGCGCCGCCGTTGCGGGTGCAAAAGCGT AA
Upstream 100 bases:
>100_bases AGCTTTCCGGTGCCGAACAGGGTGCCTGCTGCATTAAATTTTAACCGATAGCATGGCCGTACAGCCCGACGGCGGCGGCC ATAACTGGAGAAAACCGTTA
Downstream 100 bases:
>100_bases TCTTGCCGGGCGCGGTAATGAACCGCGCCCTTATGCCGTAGCCGATGTCGCGGGCAGCGCCGCACCACTACGCTGGCTGA AGCGCCGTTTTTTGCGGTAA
Product: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
Products: NA
Alternate protein names: 4-hydroxy-2-oxoglutarate aldolase; 2-keto-4-hydroxyglutarate aldolase; KHG-aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MNNWKTSAEQILMAGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTACAMDAIRAIAKEVPDAIIGAGTVINPQQL QEVTDAGAQFAISPGLTADLLKAATAGSIPLIPGICTVSELMLGMDHGLREFKFFPAEANGGVKALQAISGPFPQVRFCP TGGISPNNYRDYLALKSVLCIGGSWLVPADALESGDYARITELARAAVAGAKA
Sequences:
>Translated_213_residues MNNWKTSAEQILMAGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTACAMDAIRAIAKEVPDAIIGAGTVINPQQL QEVTDAGAQFAISPGLTADLLKAATAGSIPLIPGICTVSELMLGMDHGLREFKFFPAEANGGVKALQAISGPFPQVRFCP TGGISPNNYRDYLALKSVLCIGGSWLVPADALESGDYARITELARAAVAGAKA >Mature_213_residues MNNWKTSAEQILMAGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTACAMDAIRAIAKEVPDAIIGAGTVINPQQL QEVTDAGAQFAISPGLTADLLKAATAGSIPLIPGICTVSELMLGMDHGLREFKFFPAEANGGVKALQAISGPFPQVRFCP TGGISPNNYRDYLALKSVLCIGGSWLVPADALESGDYARITELARAAVAGAKA
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=212, Percent_Identity=86.3207547169811, Blast_Score=353, Evalue=4e-99, Organism=Escherichia coli, GI48994954, Length=175, Percent_Identity=25.7142857142857, Blast_Score=63, Evalue=1e-11,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.3.16; =4.1.2.14 [H]
Molecular weight: Translated: 22100; Mature: 22100
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1 ; PS00160 ALDOLASE_KDPG_KHG_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNWKTSAEQILMAGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTACAMDAIRAI CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AKEVPDAIIGAGTVINPQQLQEVTDAGAQFAISPGLTADLLKAATAGSIPLIPGICTVSE HHHCCHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHH LMLGMDHGLREFKFFPAEANGGVKALQAISGPFPQVRFCPTGGISPNNYRDYLALKSVLC HHHHHHCCHHHHEECCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH IGGSWLVPADALESGDYARITELARAAVAGAKA HCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNNWKTSAEQILMAGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTACAMDAIRAI CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AKEVPDAIIGAGTVINPQQLQEVTDAGAQFAISPGLTADLLKAATAGSIPLIPGICTVSE HHHCCHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHH LMLGMDHGLREFKFFPAEANGGVKALQAISGPFPQVRFCPTGGISPNNYRDYLALKSVLC HHHHHHCCHHHHEECCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH IGGSWLVPADALESGDYARITELARAAVAGAKA HCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8145647 [H]