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The map label for this gene is ygdD [H]

Identifier: 157372039

GI number: 157372039

Start: 4204667

End: 4205062

Strand: Reverse

Name: ygdD [H]

Synonym: Spro_3804

Alternate gene names: 157372039

Gene position: 4205062-4204667 (Counterclockwise)

Preceding gene: 157372040

Following gene: 157372038

Centisome position: 77.17

GC content: 56.06

Gene sequence:

>396_bases
ATGAGCAGTCGTTCAATGCTGATTTTTGCCGCTATCAGTGGCTTTGTATTTGTTGCTCTGGGCGCGTTTGGCGCACACGT
ATTAAGTGGCACCCTGGGTGCCAACGAGATGGTCTGGATCCGTACCGGACTGGACTATCAGGGGTTCCATACCCTGGCGA
TCCTGGCGCTGGCGGTGGCAATGCAGCGCCGCGTCAGCCTGTGGTTTTACTGGAGCGGAGCGTTGTTGGCGCTCGGCACC
GTACTGTTCAGCGGCAGTCTGTACTGTCTGGCGCTGTCACACCTGAAGTTCTGGGTTTATATCACGCCGATTGGCGGCGT
GTGTTTCCTGATCGGTTGGGTATTGATGTTGATTGGCGCTTTGCGTCTGAGGAAAAAGGCCGAGCGCCATGAATAG

Upstream 100 bases:

>100_bases
CGGGCAGCCAGCGAACAAGAAAAGTTCCGCTTTCGCTACGAACAATGAGGCCGGTCGCCGCGATGGCGCAGCCGGTTTTC
TTCAATAAAGGTAAATAACG

Downstream 100 bases:

>100_bases
ACTTGCGTTGTATTGCCGTCAAGGCTTTGAAAAAGAGTGTGCGGCAGAAATTACCGCCAAGGCTGCCGAACTGGAAGTGT
TCGGTTTTGCCAGAGTAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MSSRSMLIFAAISGFVFVALGAFGAHVLSGTLGANEMVWIRTGLDYQGFHTLAILALAVAMQRRVSLWFYWSGALLALGT
VLFSGSLYCLALSHLKFWVYITPIGGVCFLIGWVLMLIGALRLRKKAERHE

Sequences:

>Translated_131_residues
MSSRSMLIFAAISGFVFVALGAFGAHVLSGTLGANEMVWIRTGLDYQGFHTLAILALAVAMQRRVSLWFYWSGALLALGT
VLFSGSLYCLALSHLKFWVYITPIGGVCFLIGWVLMLIGALRLRKKAERHE
>Mature_130_residues
SSRSMLIFAAISGFVFVALGAFGAHVLSGTLGANEMVWIRTGLDYQGFHTLAILALAVAMQRRVSLWFYWSGALLALGTV
LFSGSLYCLALSHLKFWVYITPIGGVCFLIGWVLMLIGALRLRKKAERHE

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=131, Percent_Identity=75.5725190839695, Blast_Score=204, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14412; Mature: 14281

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRSMLIFAAISGFVFVALGAFGAHVLSGTLGANEMVWIRTGLDYQGFHTLAILALAVA
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
MQRRVSLWFYWSGALLALGTVLFSGSLYCLALSHLKFWVYITPIGGVCFLIGWVLMLIGA
HHHHHEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHH
LRLRKKAERHE
HHHHHHHHCCC
>Mature Secondary Structure 
SSRSMLIFAAISGFVFVALGAFGAHVLSGTLGANEMVWIRTGLDYQGFHTLAILALAVA
CCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
MQRRVSLWFYWSGALLALGTVLFSGSLYCLALSHLKFWVYITPIGGVCFLIGWVLMLIGA
HHHHHEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHH
LRLRKKAERHE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]