Definition | Serratia proteamaculans 568 chromosome, complete genome. |
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Accession | NC_009832 |
Length | 5,448,853 |
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The map label for this gene is yyaJ [H]
Identifier: 157371430
GI number: 157371430
Start: 3515876
End: 3517294
Strand: Reverse
Name: yyaJ [H]
Synonym: Spro_3193
Alternate gene names: 157371430
Gene position: 3517294-3515876 (Counterclockwise)
Preceding gene: 157371431
Following gene: 157371428
Centisome position: 64.55
GC content: 55.32
Gene sequence:
>1419_bases GTGAGTGATGTTTTGGTTGCAGGAAGCGATGCGGTGGCCCAGTCACCGATCCATGAACAGGATTTGTCAGCAAGAATTGA TGCGTTGCCGACCTCGGCCGGCCTGTGGAAGTTTATCGCTTTGCTGGCGTTGGGCGGTTTTTTTGAGCTTTATGACCTGT TCCAGACCGGCTATATCAGCACCGGTTTAATTGCCGAGGGGATATTCCATACCGGCGCGCAAGGCGTGTTCGGCGTCTCC GACCAGGCGGCTTTTGCCTCCGCCACCTTCCTTGGCCTGTTTATCGGCGCCAGCCTGCTCAGCCCCTACGCCGACCGCTT TGGCCGCCGCACCACCTTTATGTTTGCGCTGGCCTGGTACGGCGTGTTTTCGCTGTGCCTGGCCTTTCAGCATCAGGCAG AGTGGGTGATCTTCCTGCGTTTTTTGGTGGGAGTCGGATTGGGGATTGAACTGGTCACCATAGATACCTATCTGACCGAG TGGGTGCCTGCGCATCTGCGTACCCGGGCCTTTGCCTTTTCGTTTTTCATTCAATTTCTGTCGGTGCCAACGGTCGCGTT GATGTCGTGGTGGCTGGTACCACAGACCATTTTGGGTCTGAGCGGCTGGCGTTATGTGGTGATCGCCGGTGCCGTGGCTT CGCTGGTGATTTGGCTGGTGCGTAAAGGCTTGCCGGAGTCCCCGCGTTGGCTGGCGCAGCAGCGACGTTACCCGGAGGTC AGGCAGGTAATGCTAGCGATGGAGCGTCGTTGCGGTGTTACCCAGGTGACGGAATTCCCGTTGCGTGATGCCGAATCAGC AAGTGAAACGCCCGCGCAGGGAAGCTTTAAAGATATCTGGTCGCCGCGTTATCGGGGGCGAACCCTGATGCTGGTGGTGA TGAATTTCTTCCAGGCGATTGGTTTCTTCGGTTTTGGCAACTGGCTGCCGGCCTTACTGGCCGGAAAGGGCGCTTCAATC ACCCACAGTCTGCTGTACGCCTTCTTTATTACCCTGGCTTACCCGCTGGGATCATTGCTGTGCAGTCGCTATGCCGACAA GATGGAAAACAAATGGCAGATTGTTCTTTCCTGCCTGGTGACGGTGATTTTCGGCTCACTGTTTGCCATGCAGAATAATC CCCTGTGGCTGATTCTGTGCGGGTTCTTCATTACCTGGTCCAATGCCTGGCTGACCTACAGTTACCACTCCTACCAGTCA GAAGTGTTCCCGACTTATATCCGTGCCCGTGCGGTCGGATTCTGTTATTCGTTCAGCCGATTGTCGACGGTATTCAGCAG CCTGATTATTGGCATGATCCTGCAATACGGCGGTTCGGTAGGGGTGATTGCGTTTATCGTTGCCAGCATGCTGATTGTGA TGGTGGTGATCGGGGTGTTTGGTCCAAAAACTCGCGGTATCGATCTGGAAAATATCTGA
Upstream 100 bases:
>100_bases TATGCTTAATTACCTTTCATAGCCTGCTAATTAAATATTTAACTCCGACGCCGAGCCTATAGCATAGAAAAATAATAATT ATGTTATGGCGAGGTTAATG
Downstream 100 bases:
>100_bases CCGAGCCACCCGGCGTTGCGCATTGAGACAACGCCGGGATCTTCATGCTGTTATTACTTAGGCCAGATCAAAACGATCGA GGTTCATCACCTTATTCCAG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MSDVLVAGSDAVAQSPIHEQDLSARIDALPTSAGLWKFIALLALGGFFELYDLFQTGYISTGLIAEGIFHTGAQGVFGVS DQAAFASATFLGLFIGASLLSPYADRFGRRTTFMFALAWYGVFSLCLAFQHQAEWVIFLRFLVGVGLGIELVTIDTYLTE WVPAHLRTRAFAFSFFIQFLSVPTVALMSWWLVPQTILGLSGWRYVVIAGAVASLVIWLVRKGLPESPRWLAQQRRYPEV RQVMLAMERRCGVTQVTEFPLRDAESASETPAQGSFKDIWSPRYRGRTLMLVVMNFFQAIGFFGFGNWLPALLAGKGASI THSLLYAFFITLAYPLGSLLCSRYADKMENKWQIVLSCLVTVIFGSLFAMQNNPLWLILCGFFITWSNAWLTYSYHSYQS EVFPTYIRARAVGFCYSFSRLSTVFSSLIIGMILQYGGSVGVIAFIVASMLIVMVVIGVFGPKTRGIDLENI
Sequences:
>Translated_472_residues MSDVLVAGSDAVAQSPIHEQDLSARIDALPTSAGLWKFIALLALGGFFELYDLFQTGYISTGLIAEGIFHTGAQGVFGVS DQAAFASATFLGLFIGASLLSPYADRFGRRTTFMFALAWYGVFSLCLAFQHQAEWVIFLRFLVGVGLGIELVTIDTYLTE WVPAHLRTRAFAFSFFIQFLSVPTVALMSWWLVPQTILGLSGWRYVVIAGAVASLVIWLVRKGLPESPRWLAQQRRYPEV RQVMLAMERRCGVTQVTEFPLRDAESASETPAQGSFKDIWSPRYRGRTLMLVVMNFFQAIGFFGFGNWLPALLAGKGASI THSLLYAFFITLAYPLGSLLCSRYADKMENKWQIVLSCLVTVIFGSLFAMQNNPLWLILCGFFITWSNAWLTYSYHSYQS EVFPTYIRARAVGFCYSFSRLSTVFSSLIIGMILQYGGSVGVIAFIVASMLIVMVVIGVFGPKTRGIDLENI >Mature_471_residues SDVLVAGSDAVAQSPIHEQDLSARIDALPTSAGLWKFIALLALGGFFELYDLFQTGYISTGLIAEGIFHTGAQGVFGVSD QAAFASATFLGLFIGASLLSPYADRFGRRTTFMFALAWYGVFSLCLAFQHQAEWVIFLRFLVGVGLGIELVTIDTYLTEW VPAHLRTRAFAFSFFIQFLSVPTVALMSWWLVPQTILGLSGWRYVVIAGAVASLVIWLVRKGLPESPRWLAQQRRYPEVR QVMLAMERRCGVTQVTEFPLRDAESASETPAQGSFKDIWSPRYRGRTLMLVVMNFFQAIGFFGFGNWLPALLAGKGASIT HSLLYAFFITLAYPLGSLLCSRYADKMENKWQIVLSCLVTVIFGSLFAMQNNPLWLILCGFFITWSNAWLTYSYHSYQSE VFPTYIRARAVGFCYSFSRLSTVFSSLIIGMILQYGGSVGVIAFIVASMLIVMVVIGVFGPKTRGIDLENI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI166064021, Length=384, Percent_Identity=24.21875, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI166197673, Length=362, Percent_Identity=25.9668508287293, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI4506999, Length=399, Percent_Identity=22.8070175438596, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI24308167, Length=418, Percent_Identity=23.444976076555, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI216548223, Length=271, Percent_Identity=24.3542435424354, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI203098995, Length=215, Percent_Identity=29.3023255813954, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI7662270, Length=357, Percent_Identity=21.5686274509804, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1788074, Length=401, Percent_Identity=27.930174563591, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1788068, Length=463, Percent_Identity=24.1900647948164, Blast_Score=129, Evalue=5e-31, Organism=Escherichia coli, GI1786229, Length=403, Percent_Identity=25.8064516129032, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI87082159, Length=386, Percent_Identity=26.9430051813472, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI87082404, Length=395, Percent_Identity=23.0379746835443, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320595, Length=145, Percent_Identity=26.2068965517241, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 52492; Mature: 52361
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVLVAGSDAVAQSPIHEQDLSARIDALPTSAGLWKFIALLALGGFFELYDLFQTGYIS CCCCEECCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH TGLIAEGIFHTGAQGVFGVSDQAAFASATFLGLFIGASLLSPYADRFGRRTTFMFALAWY HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH GVFSLCLAFQHQAEWVIFLRFLVGVGLGIELVTIDTYLTEWVPAHLRTRAFAFSFFIQFL HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH SVPTVALMSWWLVPQTILGLSGWRYVVIAGAVASLVIWLVRKGLPESPRWLAQQRRYPEV HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHH RQVMLAMERRCGVTQVTEFPLRDAESASETPAQGSFKDIWSPRYRGRTLMLVVMNFFQAI HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH GFFGFGNWLPALLAGKGASITHSLLYAFFITLAYPLGSLLCSRYADKMENKWQIVLSCLV HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH TVIFGSLFAMQNNPLWLILCGFFITWSNAWLTYSYHSYQSEVFPTYIRARAVGFCYSFSR HHHHHHHHHHCCCCEEEEHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH LSTVFSSLIIGMILQYGGSVGVIAFIVASMLIVMVVIGVFGPKTRGIDLENI HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SDVLVAGSDAVAQSPIHEQDLSARIDALPTSAGLWKFIALLALGGFFELYDLFQTGYIS CCCEECCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH TGLIAEGIFHTGAQGVFGVSDQAAFASATFLGLFIGASLLSPYADRFGRRTTFMFALAWY HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH GVFSLCLAFQHQAEWVIFLRFLVGVGLGIELVTIDTYLTEWVPAHLRTRAFAFSFFIQFL HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH SVPTVALMSWWLVPQTILGLSGWRYVVIAGAVASLVIWLVRKGLPESPRWLAQQRRYPEV HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHH RQVMLAMERRCGVTQVTEFPLRDAESASETPAQGSFKDIWSPRYRGRTLMLVVMNFFQAI HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH GFFGFGNWLPALLAGKGASITHSLLYAFFITLAYPLGSLLCSRYADKMENKWQIVLSCLV HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH TVIFGSLFAMQNNPLWLILCGFFITWSNAWLTYSYHSYQSEVFPTYIRARAVGFCYSFSR HHHHHHHHHHCCCCEEEEHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH LSTVFSSLIIGMILQYGGSVGVIAFIVASMLIVMVVIGVFGPKTRGIDLENI HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]