| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is phbB [H]
Identifier: 157369647
GI number: 157369647
Start: 1530023
End: 1530769
Strand: Reverse
Name: phbB [H]
Synonym: Spro_1404
Alternate gene names: 157369647
Gene position: 1530769-1530023 (Counterclockwise)
Preceding gene: 157369650
Following gene: 157369642
Centisome position: 28.09
GC content: 62.12
Gene sequence:
>747_bases ATGACGCAACGTACAGCGATTGTTACCGGCGGTTCCAGCGGTATCGGGCTGGCCATCGCTCAACAACTGGCGCAACAGGA TTACCGCATCGCCATCGTGGCGCGCGACCCGCAACGCCTGCAGCAGGCGGCGCAGCAAATTGGCCCCGCTACCCGCTACT ATTCGGCGGACCTGAGCCGCCGTGGGCCAGTGGAAGACGTCGTCGCCCAGTTGGCAGCCGATCTCGGCACGGTGGATGTC CTGATTAACAACGCCGGATTTACCCGGGTGATTGCCGCCGATACGCCGTTGGCGCAGGCCGAACAAGAATGGGACGCGGT GATCGAAGGGAACCTGAAAAGTACCTTCCTGTTTACCCTGGCGATGTTGCCACACCTGAGCAAACCGGGCGGCCGCATCA TTAATCTGAGCTCAATTGCCGCCCAATGCGGCAGCGGCAGCGCGGGTGCATTAGGTTATTCCGCCGCCAAAGCCGGGGTG CAGGGTTTTACCCTCAGTCTGGCACGCGAACTTGGCGAGTTGGGGATTACCGTCAACGCCATTGCGCCGGGGTTTATCGC CGATACTCGCTTCTTCGGCGCCGGGCTACCGCAGGATCGCATTGACGCCATTGCCGCTGAAACACCGATGGGCCGCACCG GCCGGGTGGAAGACATCGCCAGCGCCGCACTGTGGCTGGCGTCAAAAGAAGCCTCGTTCGTCACCGGAACCATCACCTCG ATTAACGGCGGTGCGCGGGTCGGTTAA
Upstream 100 bases:
>100_bases ATAAATAGAGTATTGGATGTATCAATAGCAAAAGCCAATACTTTCCCGACCGCACAGTGCTGCGCCATTCCGGTGCACCC GGCGAGAAAGGAGAGCAGTT
Downstream 100 bases:
>100_bases GAAAACAGAGCTGGCCTAAGTGGCCGCACGCAGAGCGGGATTGAAATAACGTTAGCGGGCCCAACGCATATATCGGGCCC GTTTTTTATCTGGCGATCAG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MTQRTAIVTGGSSGIGLAIAQQLAQQDYRIAIVARDPQRLQQAAQQIGPATRYYSADLSRRGPVEDVVAQLAADLGTVDV LINNAGFTRVIAADTPLAQAEQEWDAVIEGNLKSTFLFTLAMLPHLSKPGGRIINLSSIAAQCGSGSAGALGYSAAKAGV QGFTLSLARELGELGITVNAIAPGFIADTRFFGAGLPQDRIDAIAAETPMGRTGRVEDIASAALWLASKEASFVTGTITS INGGARVG
Sequences:
>Translated_248_residues MTQRTAIVTGGSSGIGLAIAQQLAQQDYRIAIVARDPQRLQQAAQQIGPATRYYSADLSRRGPVEDVVAQLAADLGTVDV LINNAGFTRVIAADTPLAQAEQEWDAVIEGNLKSTFLFTLAMLPHLSKPGGRIINLSSIAAQCGSGSAGALGYSAAKAGV QGFTLSLARELGELGITVNAIAPGFIADTRFFGAGLPQDRIDAIAAETPMGRTGRVEDIASAALWLASKEASFVTGTITS INGGARVG >Mature_247_residues TQRTAIVTGGSSGIGLAIAQQLAQQDYRIAIVARDPQRLQQAAQQIGPATRYYSADLSRRGPVEDVVAQLAADLGTVDVL INNAGFTRVIAADTPLAQAEQEWDAVIEGNLKSTFLFTLAMLPHLSKPGGRIINLSSIAAQCGSGSAGALGYSAAKAGVQ GFTLSLARELGELGITVNAIAPGFIADTRFFGAGLPQDRIDAIAAETPMGRTGRVEDIASAALWLASKEASFVTGTITSI NGGARVG
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=35.7142857142857, Blast_Score=121, Evalue=6e-28, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=32.2448979591837, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=29.8387096774194, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=30.9236947791165, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI66933014, Length=215, Percent_Identity=32.093023255814, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=33.6842105263158, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI59889578, Length=224, Percent_Identity=31.25, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=30.6772908366534, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=28.2868525896414, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=29.5275590551181, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=30.8108108108108, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI31542939, Length=194, Percent_Identity=30.9278350515464, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4503301, Length=228, Percent_Identity=29.3859649122807, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=27.5193798449612, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4504505, Length=243, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4502601, Length=147, Percent_Identity=34.6938775510204, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4502599, Length=143, Percent_Identity=35.6643356643357, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI150247226, Length=189, Percent_Identity=28.042328042328, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI225579078, Length=199, Percent_Identity=32.1608040201005, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=25.8196721311475, Blast_Score=64, Evalue=9e-11, Organism=Homo sapiens, GI226371731, Length=192, Percent_Identity=27.6041666666667, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=38.8429752066116, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=31.2, Blast_Score=114, Evalue=4e-27, Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=31.1475409836066, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=31.7460317460317, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=28.8, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=32.0158102766798, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=29.9212598425197, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1787820, Length=234, Percent_Identity=28.2051282051282, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=32.7935222672065, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=31.1475409836066, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=27.9527559055118, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=26.953125, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1786701, Length=215, Percent_Identity=29.7674418604651, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=36.6935483870968, Blast_Score=130, Evalue=6e-31, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=35.8565737051793, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=30.3846153846154, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=30.9236947791165, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=31.2252964426877, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=30.7116104868914, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=29.9610894941634, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17562904, Length=248, Percent_Identity=31.0483870967742, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=30.3501945525292, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=30.4347826086957, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=29.9610894941634, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=29.4117647058824, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=30.2681992337165, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=26.3157894736842, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=28.1853281853282, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=29.6296296296296, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=28.8461538461538, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=29.4776119402985, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=32.1969696969697, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.0836653386454, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17563726, Length=244, Percent_Identity=28.6885245901639, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=27.9245283018868, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17531453, Length=274, Percent_Identity=29.1970802919708, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17561272, Length=237, Percent_Identity=31.6455696202532, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=27.734375, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560220, Length=257, Percent_Identity=28.4046692607004, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203115, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17568967, Length=219, Percent_Identity=26.9406392694064, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508895, Length=203, Percent_Identity=27.0935960591133, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=26.8774703557312, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=27.9527559055118, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=27.0916334661355, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71982365, Length=191, Percent_Identity=29.3193717277487, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=31.6, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=29.5, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=145, Percent_Identity=35.1724137931034, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=35.4581673306773, Blast_Score=138, Evalue=4e-33, Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=32.8, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.9317269076305, Blast_Score=117, Evalue=6e-27, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=33.8709677419355, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=29.3172690763052, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=33.6032388663968, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.0836653386454, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24644337, Length=227, Percent_Identity=29.9559471365639, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=28.0632411067194, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=29.7435897435897, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=28.9017341040462, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24584752, Length=188, Percent_Identity=28.1914893617021, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=28.7958115183246, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=29.3193717277487, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011283 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.36 [H]
Molecular weight: Translated: 25626; Mature: 25495
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRTAIVTGGSSGIGLAIAQQLAQQDYRIAIVARDPQRLQQAAQQIGPATRYYSADLSR CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCHHHHHCCCCCC RGPVEDVVAQLAADLGTVDVLINNAGFTRVIAADTPLAQAEQEWDAVIEGNLKSTFLFTL CCCHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHH AMLPHLSKPGGRIINLSSIAAQCGSGSAGALGYSAAKAGVQGFTLSLARELGELGITVNA HHHHCCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCEEEEE IAPGFIADTRFFGAGLPQDRIDAIAAETPMGRTGRVEDIASAALWLASKEASFVTGTITS CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEE INGGARVG CCCCCCCC >Mature Secondary Structure TQRTAIVTGGSSGIGLAIAQQLAQQDYRIAIVARDPQRLQQAAQQIGPATRYYSADLSR CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCHHHHHCCCCCC RGPVEDVVAQLAADLGTVDVLINNAGFTRVIAADTPLAQAEQEWDAVIEGNLKSTFLFTL CCCHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHH AMLPHLSKPGGRIINLSSIAAQCGSGSAGALGYSAAKAGVQGFTLSLARELGELGITVNA HHHHCCCCCCCCEEEHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCEEEEE IAPGFIADTRFFGAGLPQDRIDAIAAETPMGRTGRVEDIASAALWLASKEASFVTGTITS CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEE INGGARVG CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2670935 [H]