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The map label for this gene is yhjC [H]

Identifier: 157368892

GI number: 157368892

Start: 712258

End: 713202

Strand: Reverse

Name: yhjC [H]

Synonym: Spro_0647

Alternate gene names: 157368892

Gene position: 713202-712258 (Counterclockwise)

Preceding gene: 157368894

Following gene: 157368890

Centisome position: 13.09

GC content: 59.26

Gene sequence:

>945_bases
ATGGATCAGATCCAGGCCATGCGCATTTTCACCCGCATCGTCGAACTGGGCAGTTTCAGCCGGGCAGCCGAGCGTTTGCA
GTTACCTCGTGCCACGGTCAGCAATGCCCTCAAACGGCTCGAGCAGCGCCTCGGCGTCCGTTTGCTGATCCGCACCACCC
GCCAGGTGCAGGTGACCAGCGAAGGCACGCTGTATTATCAGCGCTGCGTGCAGTTGCTGGGTGCGCTGGAAGAAGCAGAC
ACGCTGTTCAGCCACCATAAGCTGCAGCCCTCCGGCAAGGTACGCATTGATATGCCCCATTCGCTGGCGCGTGAAATCGT
GATCCCCGCTCTGGATGACTTTTACCAACGTTATCCGGATCTGACTCTGGCGTTGGGCGCCAACGATACTCATGTTGATC
TGCTGCGCGAGGGGGTGGATTGCGTGCTGCGCGCCTGGGAAACCGAAGATGACAGCCTGGTGGCACGACGCATCGCCATG
CTGCCACAGTTGACCTGTGCTTCTCCCGGCTATCTGGCCGCGTTCGGTGTCCCCCAGTCGATTGACCAGTTGCAGCAGCA
TCAGGCGGTGGGCTATTTTTCCCTCGCCAGTAACCGTAATTACCCGCTGGAGTTTTGCCGCAACGGTAAAGTGGAGTTGC
GCGAATTGCCCGCCAGGCTGAGCGTCAGCGGTGCCGATGCTTACACCAGCGGCTGTCGCGCCGGCATGGGGCTGATACAG
GCGGCGCATTACTCGCTGGCGCCCTGGCTGCAGAAAGGGGAATTAGTCGAAGTATTGGCGGAAACCCCGCCGCCGCCGAT
GCCCATTTACATCATGTATCCCCCCGGCCGTTTCCTTGCGCCGCGGGTCAGGGTATTGATTGACTGGCTGATTTGGCTGT
TTGAACAGTATCAACAGCCCAAAACGGACGTTTTTCCAGCAAACACCCGCAAACAGGGGAAATAA

Upstream 100 bases:

>100_bases
GAGTGCTGGTACAACAGAGTCTGGTTGTTTACCCTGTAAAGATAAATAATGCAGATTACACATCACTGTTCAAAAATCGC
TAACAATACGGAGCGGCAAA

Downstream 100 bases:

>100_bases
CTATTGACGTCCCCGCCAAAATCTCTAGAATTCGCCTCCGTGGTACGTTACTCCGGTAATGTTTCTTGGAATGCGAAGGT
GGCGGAATTGGTAGACGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MDQIQAMRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTSEGTLYYQRCVQLLGALEEAD
TLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPDLTLALGANDTHVDLLREGVDCVLRAWETEDDSLVARRIAM
LPQLTCASPGYLAAFGVPQSIDQLQQHQAVGYFSLASNRNYPLEFCRNGKVELRELPARLSVSGADAYTSGCRAGMGLIQ
AAHYSLAPWLQKGELVEVLAETPPPPMPIYIMYPPGRFLAPRVRVLIDWLIWLFEQYQQPKTDVFPANTRKQGK

Sequences:

>Translated_314_residues
MDQIQAMRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTSEGTLYYQRCVQLLGALEEAD
TLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPDLTLALGANDTHVDLLREGVDCVLRAWETEDDSLVARRIAM
LPQLTCASPGYLAAFGVPQSIDQLQQHQAVGYFSLASNRNYPLEFCRNGKVELRELPARLSVSGADAYTSGCRAGMGLIQ
AAHYSLAPWLQKGELVEVLAETPPPPMPIYIMYPPGRFLAPRVRVLIDWLIWLFEQYQQPKTDVFPANTRKQGK
>Mature_314_residues
MDQIQAMRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTSEGTLYYQRCVQLLGALEEAD
TLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPDLTLALGANDTHVDLLREGVDCVLRAWETEDDSLVARRIAM
LPQLTCASPGYLAAFGVPQSIDQLQQHQAVGYFSLASNRNYPLEFCRNGKVELRELPARLSVSGADAYTSGCRAGMGLIQ
AAHYSLAPWLQKGELVEVLAETPPPPMPIYIMYPPGRFLAPRVRVLIDWLIWLFEQYQQPKTDVFPANTRKQGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=37.3737373737374, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=34.4947735191638, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=27.4576271186441, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=27.0547945205479, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=28.476821192053, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=24.5614035087719, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787128, Length=279, Percent_Identity=27.2401433691756, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=26.6666666666667, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=122, Percent_Identity=33.6065573770492, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=143, Percent_Identity=31.4685314685315, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790011, Length=258, Percent_Identity=25.5813953488372, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=121, Percent_Identity=33.8842975206612, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35460; Mature: 35460

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQIQAMRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTS
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEECCCEEEECC
EGTLYYQRCVQLLGALEEADTLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
LTLALGANDTHVDLLREGVDCVLRAWETEDDSLVARRIAMLPQLTCASPGYLAAFGVPQS
EEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCHH
IDQLQQHQAVGYFSLASNRNYPLEFCRNGKVELRELPARLSVSGADAYTSGCRAGMGLIQ
HHHHHHHHHCCEEEECCCCCCCHHHHCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHH
AAHYSLAPWLQKGELVEVLAETPPPPMPIYIMYPPGRFLAPRVRVLIDWLIWLFEQYQQP
HHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
KTDVFPANTRKQGK
CCCCCCCCCCCCCC
>Mature Secondary Structure
MDQIQAMRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTS
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEECCCEEEECC
EGTLYYQRCVQLLGALEEADTLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
LTLALGANDTHVDLLREGVDCVLRAWETEDDSLVARRIAMLPQLTCASPGYLAAFGVPQS
EEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCHH
IDQLQQHQAVGYFSLASNRNYPLEFCRNGKVELRELPARLSVSGADAYTSGCRAGMGLIQ
HHHHHHHHHCCEEEECCCCCCCHHHHCCCCCCHHHCCCHHCCCCCHHHHHHHHHHHHHHH
AAHYSLAPWLQKGELVEVLAETPPPPMPIYIMYPPGRFLAPRVRVLIDWLIWLFEQYQQP
HHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
KTDVFPANTRKQGK
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]