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The map label for this gene is yeaM [H]

Identifier: 157368823

GI number: 157368823

Start: 642567

End: 643334

Strand: Reverse

Name: yeaM [H]

Synonym: Spro_0578

Alternate gene names: 157368823

Gene position: 643334-642567 (Counterclockwise)

Preceding gene: 157368825

Following gene: 157368821

Centisome position: 11.81

GC content: 58.85

Gene sequence:

>768_bases
ATGGCATGGCTCAGCGCACAGGACGAATTTGATCCCGATGCTATCAACAATAGCGTGTTAGGCATTGCGGCCGAGCTGGC
GCAACATGATTCCGGGCCGCACTGGCACAACATGGGGCAGTTGCTGTTCAGCCAACGGGGCTGTATGCGCATCACGCTCA
ATGAAAGCATTTGCCTCCTGCCGCCGGCGCGCATTGCCTGGATCCCACCGTTGGTGGTGCACCGTGTTCAGGTTACCGGC
GTGGCGGGTTATCGCTCGGTTTATCTCGACAACCACCGCTACCCCGGCCTTTCGCCCCATCTGGAAGTGCTGTCGGCCTC
TTCTTTGCTGCGGGAAGTGCTGGAGCGGATCGCCCTCGCCGACTTTACCACCCAGTGGGAAAGCGGCCCCAGCGCCAATA
TTCTTGCCGTATGCCTGGACGAAATACGGCATGCACAGCGCGAACTGACCTTATTGCCGCTGCCCAAGGACCGCCGCTTA
CGGCAACTGGCCGGCATGGAGGAAGTACCGCCGCTCAATGAGCTGGCGCGCTACAGCGGCGCTTCGGAGAAAACCATCAG
CCGTATCTTTCGCAAGGAGACCGGATTGAGCTACCAGCAGTGGCGCCAGCAATGGCGTTTGATCAAAGCCATTGAGCTGC
TGGCGGAGGGATACGGCCTGTCAGATATCGCCGGTAAGCTTGAATTCTCCAGCGACAGCGCCTTCTCAACCTTCTTTAAA
AATATGACCGGCAGTTCGCCGCGCGCCTATATGCTGATCCGCCGTTAA

Upstream 100 bases:

>100_bases
CATCCCGTATCCAAAAAGAAAGTAGGCCACAAAGTAGCACCTTCCCCACACTGACCATTACAATATAAAAGACAAAAAAC
TTATAAAATCGGACAGACTT

Downstream 100 bases:

>100_bases
CCGCGCGCCTTCTCTGCCAACCAATAAGGCCCCGCCGCCACCGAATCACGCAGCATCAGGCTGGCCGGGAAGCTGGGGCG
CTTGCTCAGTTCGCCGCCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAWLSAQDEFDPDAINNSVLGIAAELAQHDSGPHWHNMGQLLFSQRGCMRITLNESICLLPPARIAWIPPLVVHRVQVTG
VAGYRSVYLDNHRYPGLSPHLEVLSASSLLREVLERIALADFTTQWESGPSANILAVCLDEIRHAQRELTLLPLPKDRRL
RQLAGMEEVPPLNELARYSGASEKTISRIFRKETGLSYQQWRQQWRLIKAIELLAEGYGLSDIAGKLEFSSDSAFSTFFK
NMTGSSPRAYMLIRR

Sequences:

>Translated_255_residues
MAWLSAQDEFDPDAINNSVLGIAAELAQHDSGPHWHNMGQLLFSQRGCMRITLNESICLLPPARIAWIPPLVVHRVQVTG
VAGYRSVYLDNHRYPGLSPHLEVLSASSLLREVLERIALADFTTQWESGPSANILAVCLDEIRHAQRELTLLPLPKDRRL
RQLAGMEEVPPLNELARYSGASEKTISRIFRKETGLSYQQWRQQWRLIKAIELLAEGYGLSDIAGKLEFSSDSAFSTFFK
NMTGSSPRAYMLIRR
>Mature_254_residues
AWLSAQDEFDPDAINNSVLGIAAELAQHDSGPHWHNMGQLLFSQRGCMRITLNESICLLPPARIAWIPPLVVHRVQVTGV
AGYRSVYLDNHRYPGLSPHLEVLSASSLLREVLERIALADFTTQWESGPSANILAVCLDEIRHAQRELTLLPLPKDRRLR
QLAGMEEVPPLNELARYSGASEKTISRIFRKETGLSYQQWRQQWRLIKAIELLAEGYGLSDIAGKLEFSSDSAFSTFFKN
MTGSSPRAYMLIRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=252, Percent_Identity=28.968253968254, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28755; Mature: 28624

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWLSAQDEFDPDAINNSVLGIAAELAQHDSGPHWHNMGQLLFSQRGCMRITLNESICLL
CCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEC
PPARIAWIPPLVVHRVQVTGVAGYRSVYLDNHRYPGLSPHLEVLSASSLLREVLERIALA
CCCHHHHCCHHHHHHHHEEECCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DFTTQWESGPSANILAVCLDEIRHAQRELTLLPLPKDRRLRQLAGMEEVPPLNELARYSG
HHHHHCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHCC
ASEKTISRIFRKETGLSYQQWRQQWRLIKAIELLAEGYGLSDIAGKLEFSSDSAFSTFFK
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCEECCCCHHHHHHHH
NMTGSSPRAYMLIRR
HCCCCCCCEEEEEEC
>Mature Secondary Structure 
AWLSAQDEFDPDAINNSVLGIAAELAQHDSGPHWHNMGQLLFSQRGCMRITLNESICLL
CCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEC
PPARIAWIPPLVVHRVQVTGVAGYRSVYLDNHRYPGLSPHLEVLSASSLLREVLERIALA
CCCHHHHCCHHHHHHHHEEECCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DFTTQWESGPSANILAVCLDEIRHAQRELTLLPLPKDRRLRQLAGMEEVPPLNELARYSG
HHHHHCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHCC
ASEKTISRIFRKETGLSYQQWRQQWRLIKAIELLAEGYGLSDIAGKLEFSSDSAFSTFFK
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCEECCCCHHHHHHHH
NMTGSSPRAYMLIRR
HCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]