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The map label for this gene is ycbU

Identifier: 157160463

GI number: 157160463

Start: 1064504

End: 1065046

Strand: Direct

Name: ycbU

Synonym: EcHS_A1051

Alternate gene names: 157160463

Gene position: 1064504-1065046 (Clockwise)

Preceding gene: 157160462

Following gene: 157160464

Centisome position: 22.92

GC content: 47.15

Gene sequence:

>543_bases
ATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGTCGGGATGGCTGGGCCTGA
ACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTC
ATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACC
GGTTGTGCCGCTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACT
AACTGACACAGGCGGAAGCGGTGGTATGGCAACGGGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCC
CGCTCAATCAGGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACA
AAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGA

Upstream 100 bases:

>100_bases
TGAATGTCTATCCAGTCAGCACGACAGGTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAAT
TTTGATTAACGCGTGAACGT

Downstream 100 bases:

>100_bases
AGGAGTGATGTTGAAACGGATAATCTGGATTCTGTTCTTATTGGGATTAACGTGGGGCTGTGAGCTATTTGCCCATGATG
GCACGGTCAACATTAGCGGA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDIT
GCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
KAGATGGNATAVLYFDLVYQ

Sequences:

>Translated_180_residues
MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDIT
GCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
KAGATGGNATAVLYFDLVYQ
>Mature_180_residues
MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDIT
GCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
KAGATGGNATAVLYFDLVYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787174, Length=180, Percent_Identity=100, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI1787781, Length=156, Percent_Identity=32.6923076923077, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1790773, Length=186, Percent_Identity=28.494623655914, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCBU_ECOLI (P75859)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   E64834
- RefSeq:   AP_001572.1
- RefSeq:   NP_415462.1
- ProteinModelPortal:   P75859
- SMR:   P75859
- STRING:   P75859
- EnsemblBacteria:   EBESCT00000001234
- EnsemblBacteria:   EBESCT00000014973
- GeneID:   945561
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0925
- KEGG:   eco:b0942
- EchoBASE:   EB3477
- EcoGene:   EG13713
- eggNOG:   COG3539
- GeneTree:   EBGT00050000008612
- HOGENOM:   HBG701898
- OMA:   MATWIAV
- ProtClustDB:   CLSK879854
- BioCyc:   EcoCyc:G6484-MONOMER
- Genevestigator:   P75859
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 18914; Mature: 18914

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNI
CCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCHHHHHHHHEECCCCCCC
SDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGI
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCHHCCEEEEEEECCCCCCCCCCE
AVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEECCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDVATKSALQNIHIGDFNI
CCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCHHHHHHHHEECCCCCCC
SDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDTGGSGGMATGI
CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCHHCCEEEEEEECCCCCCCCCCE
AVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEECCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503