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The map label for this gene is ycbV

Identifier: 157160464

GI number: 157160464

Start: 1065054

End: 1065569

Strand: Direct

Name: ycbV

Synonym: EcHS_A1052

Alternate gene names: 157160464

Gene position: 1065054-1065569 (Clockwise)

Preceding gene: 157160463

Following gene: 157160465

Centisome position: 22.94

GC content: 47.29

Gene sequence:

>516_bases
ATGTTGAAACGGATAATCTGGATTCTGTTCTTATTGGGATTAACGTGGGGCTGTGAGCTATTTGCCCATGATGGCACGGT
CAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATG
TCTCGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGAT
GTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCGAAATGTTGTCCATTGAAAGTGGTACGGA
TGCAGCCAGCGGGCTGGCAATTGCGATTCTGGATGATGCGAAGATATTGATTCCGCTTAACCAGGCGAGTAAAGACTACA
GCCTACATAGCGGTAAGGTGCCATTAACTTTTTATGCGCAATTGCGACCTGTCAATAGCGATGTGCAGTCGGGTAAAGTG
AATGCCAGCGCGACATTTGTACTTCATTATGACTAA

Upstream 100 bases:

>100_bases
CTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAGCAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCT
GGTTTACCAGTGAAGGAGTG

Downstream 100 bases:

>100_bases
TACGTGGAACAGATTGGCGCTCTTGATTTTCGCCGTTTTATCGCTGCTGGTGGCGGGTGAATTGCAGGCAGGAGTGGTGG
TCGGCGGAACGCGATTTATC

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSHGNYGPEKSFIINLQDCGTD
VSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKV
NASATFVLHYD

Sequences:

>Translated_171_residues
MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSHGNYGPEKSFIINLQDCGTD
VSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKV
NASATFVLHYD
>Mature_171_residues
MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFSHGNYGPEKSFIINLQDCGTD
VSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKV
NASATFVLHYD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081805, Length=171, Percent_Identity=100, Blast_Score=352, Evalue=7e-99,
Organism=Escherichia coli, GI1790773, Length=156, Percent_Identity=37.8205128205128, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87082421, Length=174, Percent_Identity=31.6091954022989, Blast_Score=84, Evalue=4e-18,
Organism=Escherichia coli, GI1787781, Length=177, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCBV_ECOLI (P75860)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F64834
- RefSeq:   AP_001573.1
- RefSeq:   NP_415463.2
- ProteinModelPortal:   P75860
- SMR:   P75860
- DIP:   DIP-48182N
- STRING:   P75860
- EnsemblBacteria:   EBESCT00000002811
- EnsemblBacteria:   EBESCT00000018367
- GeneID:   945562
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5123
- KEGG:   eco:b0943
- EchoBASE:   EB3478
- EcoGene:   EG13714
- eggNOG:   COG3539
- GeneTree:   EBGT00050000008609
- HOGENOM:   HBG701898
- OMA:   KQIIWIL
- ProtClustDB:   CLSK879855
- BioCyc:   EcoCyc:G6485-MONOMER
- Genevestigator:   P75860
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 18512; Mature: 18512

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFS
CHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCEEEEEECCCEEEEEECCEEEEEEC
HGNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDA
CCCCCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCHHHEEEECCCCCCCCCEEEEEECCC
KILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVNASATFVLHYD
EEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCEEEEEEEEC
>Mature Secondary Structure
MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDSKQINVQLGDVSLTRFS
CHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCEEEEEECCCEEEEEECCEEEEEEC
HGNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSIESGTDAASGLAIAILDDA
CCCCCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCHHHEEEECCCCCCCCCEEEEEECCC
KILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKVNASATFVLHYD
EEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503