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The map label for this gene is ycbS [H]

Identifier: 157160461

GI number: 157160461

Start: 1060831

End: 1063431

Strand: Direct

Name: ycbS [H]

Synonym: EcHS_A1049

Alternate gene names: 157160461

Gene position: 1060831-1063431 (Clockwise)

Preceding gene: 157160460

Following gene: 157160462

Centisome position: 22.85

GC content: 47.79

Gene sequence:

>2601_bases
ATGTATAGAACTCACCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT
GTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGAACCTGCCTTTTTCAAAGATGATCCCTCAATGGTGGCCGATT
TGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGAT
ACGCGCAACGTCAATTTTGTTGAGTTAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT
GGGTGTGAATACTGATGCGTTTCCGGCTTTTAAACAACTGGACAAACAAGCGTGTGCGCTATTGGCGGAGATTATTCCGG
ATGCCAGCGTAACTTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATTGCTATAAAAAGTAACGCTCGT
GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCATTTAGCGGGGCTAACAGTAT
TCATAGCAGCGCAGACAGTGATTCTGGCGACAGTTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT
TGCGCAACAATTCAACATGGAGTCGCAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCATCAGCTATTTGCAGCGGGCG
GTTATTCCACTAAAAGGCGAACTGACCGTAGGTGATGATTATACTGCAGGCGATTTTTTCGATAGTGTCAGCTTTCGTGG
TGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCCTGAAAGGGTTTGCGCCTGTGGTGCGTGGTATCGCCAAAA
GCAATGCCCAGATAACGATTAAGCAAAATGGTTACACCATTTACCAAACTTATGTATCGCCTGGTGCTTTTGAAATTAGT
GATCTCTATTCCACGTCGTCGAGCGGTGATTTGTTAGTTGAAATCAAAGAAGCGGACGGCAGCGTCAATAGCTACAGCGT
ACCGTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATA
GTAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACATGGTATGGTGGT
GGACAATATGCTGAATATTACCGTGCCGCCATGTTTGGTCTGGGATTTAACCTTGGCGATTTCGGAGCAATTTCGTTCGA
TGCGACCCAGGCGAAGAGTACGCTGGCAGACCAAAGCGAACATAAAGGTCAGTCATATCGTTTTCTGTATGCCAAAACGC
TCAACCAATTGGGCACTAATTTTCAATTGATGGGCTATCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACCATG
TATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTT
TTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCC
AGCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTCTCGCTG
GGGGGTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCACTAAATTTTTCCCTGCCGCT
CAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCG
ATAACGAAGGGCACATTACACAAAACCTGGGTTTAACGGAGACACTACTCGATGACGGTAACCTGAGCTACAGCGTGCAA
CAGGGATATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGCATGGACTACAAAGGGGCGTTTGCAGATGCCCGAGT
GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTGAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAGG
GCATTACCCTGGGGCAATCGCTGGGGGAAACTAACGTTCTGATTGCAGCACCAGGCGCAGAGAATACTCGTGTGGCGAAC
AGCACCGGGCTGAAAACTGACTGGCGCGGATATACCGTTGTTCCTTATGCCACTTCTTATCGGGAAAATCGAATCGCACT
TGATGCGGCGTCGTTAAAACGTAACGTGGATCTTGAAAATGCAGTAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTC
TGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGCAGGGTATACCGCTGCGTTTTGGCGCG
ATAGCGACGCTGGACGGCGTACAGGCTAATAGCGGCATAATTGATGATGATGGCTCGCTCTATATGGCGGGTTTACCGGC
GAAGGGAACAATAAGCGTGCGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAATTACGAGCTTACCGAACAACAAA
TTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAA

Upstream 100 bases:

>100_bases
CAAAAATAGCAGCGTAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAATTCG
TCTTCAGTTAAGAGAGCGAG

Downstream 100 bases:

>100_bases
TCTTTGGAGAAAAATGCGTGTCATTACTACGACTATTTTTTGCCGCCGTCTTAATGCTATGGTGCGCTCAAACCGCTGCT
TATAGCGGGCAGTGTCATAC

Product: outer membrane usher protein fimD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 866; Mature: 866

Protein sequence:

>866_residues
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFEPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVELTPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACALLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLISYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAITRMDAICR

Sequences:

>Translated_866_residues
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFEPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVELTPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACALLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLISYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAITRMDAICR
>Mature_866_residues
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFEPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVELTPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACALLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLISYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAITRMDAICR

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=866, Percent_Identity=99.0762124711316, Blast_Score=1768, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=857, Percent_Identity=48.6581096849475, Blast_Score=815, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=850, Percent_Identity=44.9411764705882, Blast_Score=743, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=871, Percent_Identity=38.691159586682, Blast_Score=547, Evalue=1e-156,
Organism=Escherichia coli, GI1786332, Length=858, Percent_Identity=32.0512820512821, Blast_Score=381, Evalue=1e-107,
Organism=Escherichia coli, GI1788427, Length=823, Percent_Identity=30.9842041312272, Blast_Score=352, Evalue=8e-98,
Organism=Escherichia coli, GI87081778, Length=817, Percent_Identity=27.4173806609547, Blast_Score=241, Evalue=2e-64,
Organism=Escherichia coli, GI1789610, Length=814, Percent_Identity=24.6928746928747, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 95218; Mature: 95218

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFEPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCEECCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVELTPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQACALLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLISYLQRA
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITI
HCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGD
EEEEEEEEEECCCCCHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTR
CCHHHHEECCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGIPLRFGAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPD
CCEEEEEECCCCCCCEEECCEEEECCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCC
QICHINYELTEQQINSAITRMDAICR
CEEEEEEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFEPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCEECCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVELTPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQACALLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLISYLQRA
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITI
HCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGD
EEEEEEEEEECCCCCHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTR
CCHHHHEECCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCEEECCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGIPLRFGAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPD
CCEEEEEECCCCCCCEEECCEEEECCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCC
QICHINYELTEQQINSAITRMDAICR
CEEEEEEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]