Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
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Accession | NC_002737 |
Length | 1,852,441 |
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The map label for this gene is recU [H]
Identifier: 15675520
GI number: 15675520
Start: 1366606
End: 1367205
Strand: Direct
Name: recU [H]
Synonym: SPy_1648
Alternate gene names: 15675520
Gene position: 1366606-1367205 (Clockwise)
Preceding gene: 228995275
Following gene: 15675521
Centisome position: 73.77
GC content: 36.17
Gene sequence:
>600_bases ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAAATAAGGTGGACTTCGCCAATAG AGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTCACAAAAAAC CTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTTAGACAAGCT TCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAAAACAGCTAT GCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCTTTGTCCTTC TTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGATAATGGCAGT AAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCCTTATTTAAA CATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA
Upstream 100 bases:
>100_bases GTAATTAGAATCGCAGTCATTAGGTGTTATCCTTTCAAAAAATATGTTATAATAAAAGTGCTTAAATTTTTAGCATTAAC TAGATAATATTAGGAGAACA
Downstream 100 bases:
>100_bases AAATCCAAAAATCCTTAAGTGGCTAAAGTATGTATTAAGTGCAATTCTTAGCCTTATTATCCTTGTTATTATTATTGGTG GTCTTTTGTTTACCTTCTAC
Product: Holliday junction-specific endonuclease
Products: NA
Alternate protein names: Recombination protein U homolog [H]
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA STTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGS KSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN
Sequences:
>Translated_199_residues MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA STTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGS KSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN >Mature_199_residues MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA STTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGS KSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN
Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair
COG id: COG3331
COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recU family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004612 - InterPro: IPR011335 [H]
Pfam domain/function: PF03838 RecU [H]
EC number: NA
Molecular weight: Translated: 23000; Mature: 23000
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIV CCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCEEEEEEEEEEECCCCCEEEE KVDYPKRSRAKIVEAYFRQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHM EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCHHHHHHHH ACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGSKSMPIDYIRKNGFKVAFGAF HHHHHCCCEEEEEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCC PQVPYLNIIEQNFLGGDYN CCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MVNYPHNLIRQKVSSVQKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIV CCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCEEEEEEEEEEECCCCCEEEE KVDYPKRSRAKIVEAYFRQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHM EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCHHHHHHHH ACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDNGSKSMPIDYIRKNGFKVAFGAF HHHHHCCCEEEEEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCC PQVPYLNIIEQNFLGGDYN CCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12122206; 12799345 [H]