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The map label for this gene is citD

Identifier: 15675156

GI number: 15675156

Start: 973601

End: 973909

Strand: Direct

Name: citD

Synonym: SPy_1186

Alternate gene names: 15675156

Gene position: 973601-973909 (Clockwise)

Preceding gene: 15675155

Following gene: 15675157

Centisome position: 52.56

GC content: 41.42

Gene sequence:

>309_bases
ATGGATATTAAACAAACTGCCGTTGCTGGTTCACTTGAATCAAGTGACCTAATGATTACAGTATCCCCTAATGACGAGCA
AACCATTACAATAACCCTAGACAGTAGTGTTGAAAAACAATTTGGCAATCACATTCGTCAACTCATTCATCAAACCCTAG
TGAATTTGAAGGTGACGGCTGCTAAAGTAGAGGCTGTTGATAAAGGTGCATTAGATTGCACCATTCAAGCGAGAACCATC
GCAGCTGTTCATCGCGCTGCTGGTATTGACCAATACGATTGGAAGGAGATTGACTCATGGAACGTTTAA

Upstream 100 bases:

>100_bases
TCGTGTTAGGCATTCTCTATCTTGTCGCAGAGATCCTGATCAAACTTTTCCCAGTTAGTAAATAACAATATCATTTAAGA
AAATCAAGGAGGTAAACGCA

Downstream 100 bases:

>100_bases
GAAGAACAATGATGTTTGTGCCTGGTGCCAATGCAGCCATGCTTCGAGATGCTCCTTTATTTGGCGCTGATTCAATCATG
TTTGACTTGGAAGATTCTGT

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MDIKQTAVAGSLESSDLMITVSPNDEQTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTAAKVEAVDKGALDCTIQARTI
AAVHRAAGIDQYDWKEIDSWNV

Sequences:

>Translated_102_residues
MDIKQTAVAGSLESSDLMITVSPNDEQTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTAAKVEAVDKGALDCTIQARTI
AAVHRAAGIDQYDWKEIDSWNV
>Mature_102_residues
MDIKQTAVAGSLESSDLMITVSPNDEQTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTAAKVEAVDKGALDCTIQARTI
AAVHRAAGIDQYDWKEIDSWNV

Specific function: Covalent carrier of the coenzyme of citrate lyase

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family

Homologues:

Organism=Escherichia coli, GI1786834, Length=96, Percent_Identity=46.875, Blast_Score=90, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CITD_STRP1 (Q99ZK9)

Other databases:

- EMBL:   AE004092
- EMBL:   CP000017
- RefSeq:   NP_269330.1
- RefSeq:   YP_282268.1
- EnsemblBacteria:   EBSTRT00000000004
- EnsemblBacteria:   EBSTRT00000028680
- GeneID:   3571997
- GeneID:   901296
- GenomeReviews:   AE004092_GR
- GenomeReviews:   CP000017_GR
- KEGG:   spy:SPy_1186
- KEGG:   spz:M5005_Spy_0905
- GeneTree:   EBGT00050000028912
- HOGENOM:   HBG359308
- OMA:   ESSDIMI
- ProtClustDB:   PRK13253
- BioCyc:   SPYO160490:SPY1186-MONOMER
- BioCyc:   SPYO293653:M5005_SPY0905-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00805
- InterPro:   IPR006495
- InterPro:   IPR009662
- PIRSF:   PIRSF002736
- ProDom:   PD015389
- TIGRFAMs:   TIGR01608

Pfam domain/function: PF06857 MdcD

EC number: 4.1.3.6

Molecular weight: Translated: 11193; Mature: 11193

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKQTAVAGSLESSDLMITVSPNDEQTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTA
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCEEEEH
AKVEAVDKGALDCTIQARTIAAVHRAAGIDQYDWKEIDSWNV
HHEHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDIKQTAVAGSLESSDLMITVSPNDEQTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTA
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCEEEEH
AKVEAVDKGALDCTIQARTIAAVHRAAGIDQYDWKEIDSWNV
HHEHHCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296