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The map label for this gene is gcdB [H]

Identifier: 15675155

GI number: 15675155

Start: 972292

End: 973413

Strand: Direct

Name: gcdB [H]

Synonym: SPy_1184

Alternate gene names: 15675155

Gene position: 972292-973413 (Clockwise)

Preceding gene: 15675154

Following gene: 15675156

Centisome position: 52.49

GC content: 41.8

Gene sequence:

>1122_bases
GTGGACACTTTAATCGCAGGAATAACCTCCATCACCATTCCTCAAATTGTTATGATGGTCATTGGTGCCCTCTTAATGTA
TCTAGGAATTAAAAAAGAATACGAACCAACCTTACTTGTCCCCATGGGACTTGGAACCATTCTCGTTAACTTCCCTGGTT
CAGGAGTTTTAACACAAGTGGTTAACGGAGTCGAGCAAGAAGGGGTTTTTGAGGCTCTCTTCAATTTTGGGATTGGAACA
GAACTTTTCCCACTGTTGATTTTCATTGGTATAGGAGCCATGATTGACTTTGGCCCCTTGCTTCAAAACCCATTCATGCT
CTTGTTTGGTGATGCAGCTCAATTCGGAATTTTCTTTGTTGTGGTTGTTGCCGTACTGGCTGGCTTTGACATTAAAGAAG
CAGCTTCAATCGGCATTATCGGAGCAGCAGACGGACCGACTTCTATCTTTGTTGCCAACCAACTGGCCAAGGATTTACTG
GGTCCAATTACGGTTGCAGCCTATTCTTACATGGCTCTGGTTCCTATTATCCAACCATTTGCCATTAAATTAGTGACAAC
GAAAAAAGAGCGCCGTATCCGTATGACTTACAAAGCTGAGAATGTATCTCAAATGACTAAAATCTTATTCCCAATCATCA
TTACCTTAGTAGCAGGGTTCATCGCCCCAATTTCTCTACCTTTAGTTGGCTTTTTGATGTTCGGTAACTTATTACGGGAG
TGTGGTGTGCTCGATCGCCTGTCACAAACTGCTCAAAATGAATTGGTAAACATTATTAGTATCTTGCTTGGATTGACCAT
CTCTATTAAAATGCAGGCAGACCTGTTCTTAAATGTACAGACACTCTTAATCATCGTCTTTGGTTTACTTGCTTTTATCA
TGGATTCTATCGGTGGGGTCATGTTTGCCAAATTTCTCAATCTCTTCCGAAAAGAGAAGATTAATCCAATGATTGGCGCT
GCGGGTATTTCAGCTTTTCCAATGTCAAGTCGTGTCATTCAAAAAATGGCAACAGATGAAGACCCGCAAAACTTTATCCT
CATGTATGCTGTAGGTGCCAATGTCTCTGGCCAAATCGCCTCTGTTATCGCAGGTGGTTTGTTGCTAGCTTACTTTAGCT
AA

Upstream 100 bases:

>100_bases
ACGTCGGTCCAGGTCAAGTGGTCAATCCTGGTGATGGTCTCATTACAATTGGTTAATAGTACTATAACTAGAATAAATAG
ACAGAAAAGGAAGTGAATTT

Downstream 100 bases:

>100_bases
GAAAGGAAGGAAACCTTATGACAATTAATATGGACCATTTGATTAGTTCCTTTGAGCTAATGGCGCTTGGTATGGCAGGT
GTCTTTATCGTGTTAGGCAT

Product: putative decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDTLIAGITSITIPQIVMMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFGIGT
ELFPLLIFIGIGAMIDFGPLLQNPFMLLFGDAAQFGIFFVVVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLL
GPITVAAYSYMALVPIIQPFAIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRE
CGVLDRLSQTAQNELVNIISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPMIGA
AGISAFPMSSRVIQKMATDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS

Sequences:

>Translated_373_residues
MDTLIAGITSITIPQIVMMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFGIGT
ELFPLLIFIGIGAMIDFGPLLQNPFMLLFGDAAQFGIFFVVVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLL
GPITVAAYSYMALVPIIQPFAIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRE
CGVLDRLSQTAQNELVNIISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPMIGA
AGISAFPMSSRVIQKMATDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS
>Mature_373_residues
MDTLIAGITSITIPQIVMMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFGIGT
ELFPLLIFIGIGAMIDFGPLLQNPFMLLFGDAAQFGIFFVVVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLL
GPITVAAYSYMALVPIIQPFAIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRE
CGVLDRLSQTAQNELVNIISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPMIGA
AGISAFPMSSRVIQKMATDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 40074; Mature: 40074

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLIAGITSITIPQIVMMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHH
VNGVEQEGVFEALFNFGIGTELFPLLIFIGIGAMIDFGPLLQNPFMLLFGDAAQFGIFFV
HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
VVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLLGPITVAAYSYMALVPIIQPF
HHHHHHCCCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRE
HHEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGVLDRLSQTAQNELVNIISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGV
CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFAKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFILMYAVGANVSGQIA
HHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
SVIAGGLLLAYFS
HHHHHHHHHHHCC
>Mature Secondary Structure
MDTLIAGITSITIPQIVMMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHH
VNGVEQEGVFEALFNFGIGTELFPLLIFIGIGAMIDFGPLLQNPFMLLFGDAAQFGIFFV
HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
VVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLLGPITVAAYSYMALVPIIQPF
HHHHHHCCCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRE
HHEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGVLDRLSQTAQNELVNIISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGV
CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFAKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFILMYAVGANVSGQIA
HHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
SVIAGGLLLAYFS
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]