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The map label for this gene is yckB [H]

Identifier: 15674925

GI number: 15674925

Start: 747754

End: 748653

Strand: Direct

Name: yckB [H]

Synonym: SPy_0903

Alternate gene names: 15674925

Gene position: 747754-748653 (Clockwise)

Preceding gene: 15674924

Following gene: 15674926

Centisome position: 40.37

GC content: 37.33

Gene sequence:

>900_bases
ATGTTATACTATTCTTATCTTAATAAAGGAGTTACTATGAAGAAATCAGTTACATTACTGTCTATCGGACTTGCCAGCCT
TTTATTGGCAGCATGTGCGCCACATCAATCTCAAAAATCAAGTTGGGACACTATCAAAGAAAAAGGGGTGTTAAAAGTAG
CTACCCCAGGAACCTATCAGCCAACTTCTTTTTACAACGATAATAATGAGTTAGTAGGTTACGAAGTAGATATGGTCAAA
GAAATCGGTAAACGACTTAACATTAAAGTCAAGTTTGTTGAAACAGGATTTGACCAAGCCTTTACCTCAGTTGATAGTGG
TCGAGTGGATATTTCTTTGAACAACTTTGACATTACCCCAAAACGTCAGAAAAAATACAATATCTCTACGCCTTATAAAT
ACGGGGTAGGAGGCATGATTGTCCGTGCTGATGGCAGCTCAAACATAGCTAAAAAAGATCTTAGCGACTGGAAAGGAAAA
AAAGCAGCCGGCGCTTCTGGAACAGAATACATGAAAGTAGCGCAAAAACAGGGAGCTGAACTGGTGACCTACGATAATGT
TACAGGAGATGTTTATCTAAACGATGTGGCTAACGGTCGAACAGATTTCATCCCAAATGATTACCCAGCTCAAAAATTAT
TTGTGGATTACATGTTATCTCAAAATCCAAATCTAAATGTCAAAATGAGCGATGTTCAGTACAACCCAACCGAACAAGGA
ATTGTTATGAACAAAAAAGACGATAGCCTCAAGAAAAAAATAGATGCTGTTATTAAAGACATGATAAAAGATGGTAGCTT
GAAGAAAATCTCTGAAACCTACTATGCTGGTCAAGATCTGACAAAACCTTTTGGCAAAGACAAAAAAATTCCCGTCATTG
ATACGAAAGACGTTAACTAA

Upstream 100 bases:

>100_bases
ATTGAAGATTCCTCAATAATAATCTTATAAAACAGTTTAACTATTATAGATTAACTTTTTAAAGAGATTGAGTGCTCACT
GATAACACAACTTAATCAAA

Downstream 100 bases:

>100_bases
TACTTGATGTTAAAGGAGTCCTAACCACATGATTAATATCCCATTAATGAAAGATAGTTTAGGATTTGTGTTATCGGGAT
TACCTTATACCCTTGGTATT

Product: putative ABC transporter binding protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLYYSYLNKGVTMKKSVTLLSIGLASLLLAACAPHQSQKSSWDTIKEKGVLKVATPGTYQPTSFYNDNNELVGYEVDMVK
EIGKRLNIKVKFVETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPYKYGVGGMIVRADGSSNIAKKDLSDWKGK
KAAGASGTEYMKVAQKQGAELVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQG
IVMNKKDDSLKKKIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPVIDTKDVN

Sequences:

>Translated_299_residues
MLYYSYLNKGVTMKKSVTLLSIGLASLLLAACAPHQSQKSSWDTIKEKGVLKVATPGTYQPTSFYNDNNELVGYEVDMVK
EIGKRLNIKVKFVETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPYKYGVGGMIVRADGSSNIAKKDLSDWKGK
KAAGASGTEYMKVAQKQGAELVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQG
IVMNKKDDSLKKKIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPVIDTKDVN
>Mature_299_residues
MLYYSYLNKGVTMKKSVTLLSIGLASLLLAACAPHQSQKSSWDTIKEKGVLKVATPGTYQPTSFYNDNNELVGYEVDMVK
EIGKRLNIKVKFVETGFDQAFTSVDSGRVDISLNNFDITPKRQKKYNISTPYKYGVGGMIVRADGSSNIAKKDLSDWKGK
KAAGASGTEYMKVAQKQGAELVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQG
IVMNKKDDSLKKKIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPVIDTKDVN

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=266, Percent_Identity=31.9548872180451, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787085, Length=269, Percent_Identity=29.368029739777, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787088, Length=231, Percent_Identity=28.1385281385281, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788648, Length=231, Percent_Identity=24.6753246753247, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788649, Length=269, Percent_Identity=25.2788104089219, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 33233; Mature: 33233

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYYSYLNKGVTMKKSVTLLSIGLASLLLAACAPHQSQKSSWDTIKEKGVLKVATPGTYQ
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCC
PTSFYNDNNELVGYEVDMVKEIGKRLNIKVKFVETGFDQAFTSVDSGRVDISLNNFDITP
CCCEECCCCCEEEEEHHHHHHHHHHCEEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCC
KRQKKYNISTPYKYGVGGMIVRADGSSNIAKKDLSDWKGKKAAGASGTEYMKVAQKQGAE
CCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCE
LVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQG
EEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEECCCCCC
IVMNKKDDSLKKKIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPVIDTKDVN
EEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCCCCCCCEECCCCCC
>Mature Secondary Structure
MLYYSYLNKGVTMKKSVTLLSIGLASLLLAACAPHQSQKSSWDTIKEKGVLKVATPGTYQ
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCC
PTSFYNDNNELVGYEVDMVKEIGKRLNIKVKFVETGFDQAFTSVDSGRVDISLNNFDITP
CCCEECCCCCEEEEEHHHHHHHHHHCEEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCC
KRQKKYNISTPYKYGVGGMIVRADGSSNIAKKDLSDWKGKKAAGASGTEYMKVAQKQGAE
CCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCE
LVTYDNVTGDVYLNDVANGRTDFIPNDYPAQKLFVDYMLSQNPNLNVKMSDVQYNPTEQG
EEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCEECCCCCC
IVMNKKDDSLKKKIDAVIKDMIKDGSLKKISETYYAGQDLTKPFGKDKKIPVIDTKDVN
EEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 9384377 [H]