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The map label for this gene is yckA [H]

Identifier: 15674926

GI number: 15674926

Start: 748682

End: 749332

Strand: Direct

Name: yckA [H]

Synonym: SPy_0904

Alternate gene names: 15674926

Gene position: 748682-749332 (Clockwise)

Preceding gene: 15674925

Following gene: 15674927

Centisome position: 40.42

GC content: 37.94

Gene sequence:

>651_bases
ATGATTAATATCCCATTAATGAAAGATAGTTTAGGATTTGTGTTATCGGGATTACCTTATACCCTTGGTATTTCGTTGCT
CAGTTTTTTTACGGGTCTGTTTTTAGGTTTAGGCCTAGCCCTTCTGGGAAGGTCACGTCAGCCGTTGATTCATTATCTTG
TTAGAGCGTACATCTCTATTATGCGAGGTGTGCCGATGATCGTGGTGCTCTTTGTTCTTTATTTCGGGTTGCCTTATTAT
GGTTTAGAATTGCCAGCTTTACTTTGCGCTTATCTTGGTTTTTCTATGGTTAGCGCTGCCTATATTTCTGAAGTTTTTCG
CTCTTCTATAGAAGCTATTGACAAGGGACAATGGGAAGCAGCTAAGGCTTTAGGGTTGCCATATGCTCTTATGGTTAAGA
AAATTATTCTTCCTCAAGCCTTTCGAATTGCAGTTCCTCCTTTAGGAAATGTCATTATTGATATGGTTAAAAGTTCGTCG
CTAGCTGCCATGATTACCGTACCAGATATTTTTCAAAATGCCAAAATTATTGGCGGTAGAGAGTGGGATTACATGTCCAT
GTATATTTTAGTAGCCTTTATCTATTGGCTTATTGCTTTTTTGTTAGAACGTTACCAAGAATTCTTAGAAAATAAGCTAG
CACTTGTTTAA

Upstream 100 bases:

>100_bases
GGTCAAGATCTGACAAAACCTTTTGGCAAAGACAAAAAAATTCCCGTCATTGATACGAAAGACGTTAACTAATACTTGAT
GTTAAAGGAGTCCTAACCAC

Downstream 100 bases:

>100_bases
TATCCTGTAAAAAACGAATATTAACCCTGGAAATATCATATTTTCAGGGTCTTTCTATTTAAAATGTGGTAAACTAGATA
GAAAAGGACATCGTATTTAA

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MINIPLMKDSLGFVLSGLPYTLGISLLSFFTGLFLGLGLALLGRSRQPLIHYLVRAYISIMRGVPMIVVLFVLYFGLPYY
GLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEAAKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSS
LAAMITVPDIFQNAKIIGGREWDYMSMYILVAFIYWLIAFLLERYQEFLENKLALV

Sequences:

>Translated_216_residues
MINIPLMKDSLGFVLSGLPYTLGISLLSFFTGLFLGLGLALLGRSRQPLIHYLVRAYISIMRGVPMIVVLFVLYFGLPYY
GLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEAAKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSS
LAAMITVPDIFQNAKIIGGREWDYMSMYILVAFIYWLIAFLLERYQEFLENKLALV
>Mature_216_residues
MINIPLMKDSLGFVLSGLPYTLGISLLSFFTGLFLGLGLALLGRSRQPLIHYLVRAYISIMRGVPMIVVLFVLYFGLPYY
GLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEAAKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSS
LAAMITVPDIFQNAKIIGGREWDYMSMYILVAFIYWLIAFLLERYQEFLENKLALV

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=45.0236966824645, Blast_Score=184, Evalue=4e-48,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=36.7647058823529, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1786873, Length=213, Percent_Identity=32.8638497652582, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787086, Length=220, Percent_Identity=31.3636363636364, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787087, Length=209, Percent_Identity=27.7511961722488, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=32.0197044334975, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=31.3725490196078, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI48994930, Length=87, Percent_Identity=42.5287356321839, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786874, Length=214, Percent_Identity=26.1682242990654, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=24.0566037735849, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24136; Mature: 24136

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINIPLMKDSLGFVLSGLPYTLGISLLSFFTGLFLGLGLALLGRSRQPLIHYLVRAYISI
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MRGVPMIVVLFVLYFGLPYYGLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEA
HCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSSLAAMITVPDIFQNAKIIGGR
HHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCC
EWDYMSMYILVAFIYWLIAFLLERYQEFLENKLALV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINIPLMKDSLGFVLSGLPYTLGISLLSFFTGLFLGLGLALLGRSRQPLIHYLVRAYISI
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MRGVPMIVVLFVLYFGLPYYGLELPALLCAYLGFSMVSAAYISEVFRSSIEAIDKGQWEA
HCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AKALGLPYALMVKKIILPQAFRIAVPPLGNVIIDMVKSSSLAAMITVPDIFQNAKIIGGR
HHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCC
EWDYMSMYILVAFIYWLIAFLLERYQEFLENKLALV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]