Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is ypjG
Identifier: 15673537
GI number: 15673537
Start: 1595665
End: 1597536
Strand: Reverse
Name: ypjG
Synonym: L195415
Alternate gene names: 15673537
Gene position: 1597536-1595665 (Counterclockwise)
Preceding gene: 15673538
Following gene: 15673536
Centisome position: 67.53
GC content: 36.32
Gene sequence:
>1872_bases ATGGCAGACTTCATCGCACAAAATTTAAGTAAATCAGTTGGAGAAAAAATGGTTTTCAACAAAATCAATTTTATCATTCA TGATCTTGACCGAATTGGTCTTTTGGGAGTTAATGGTACGGGTAAAACAACGCTCCTAAATGTTATTTCAGGACTTTCAG GATTTGATGGAGACCGCACGCCCTTTGATCATCCACAAAATTATAAAATTACATACCTTACTCAGGAACCTGATTTTAAT CCAAAAGCTACAATTTTAGACACCGTCTTAGATGATTCGCTTCCGCAAATGCGAGCAATTAAAAATTACGAAGCAGCCCT TTTAGATTATGAAAATTTAGCTAAGTTAGAACGTGCCCAATCAGGAATGGATGCTCTGAATGCTTGGCAAGTAGAAGCAG ATGTCAAAACAATTTTGACTAAACTTCAACTTCCTGACTCTGCCACTCTAATCGAAAGCCTTTCAGGTGGACAAAAAAGA CGGGTTCAATTGGCTCAAGCTTTAGTCAATGATTCCGATTTATTATTACTTGATGAACCAACCAACCACCTCGATGTTGA AACCATCGCTTGGTTGCAAAATTATCTAAAAAATTCTCGAAGAACCGTTCTTTTTGTCACGCACGACCGCTATTTCTTAG ATAATGTTGCAACACGAATTTTTGAACTTGAAGATGCGGGTCTTAAAGAATACCAAGGAAATTATCAAGATTATCTTGCA AAAAAAGCTGAAGATGAAGAAAGAGAAGCCGCAGCAAGTCACAAGGCAAAACAACTTTATCAATCTGAATTAACTTGGAT TCGTAAATCACCTCAAGCGCGTGCTACAAAACAACAAGCACGGATTGACCGCTTTGAAGACCTTAAAGATTCTATGAAAA CTAGTAAAAATCTAGGAGATTTAGAACTCAACATTGCGAGCAGTCGCTTAGGGAAAAAAGTAATTAATTTTAAAAATGCC GCTTTTTCTTATCCTGACCGACCAATTTTTAAAGATTTTGAATTAATCGTTCAAGGGCATTCGCGCTTGGGGATTGTTGG TGATAATGGCGTCGGAAAATCGACCTTACTCAATATCATTGATGGTGAGCTAGCATTAACTGACGGGATTTTGGAAATTG GTGAAACGGTAAAAATTGGTTATTTCAGTCAAGAAATTCGTGGACTTGATGAAAATAAACGCATGATTAACTTTCTTGAA GAAGTTGCATCTGCTGCGCATAACAGCAGCGGTGAAAATATTTCAATTGTTAATTTATTAGAGCAGTTTCTCTTCCCAAG AAGTAGTCATGGAACACTGATTTCTAAACTTTCAGGTGGTGAGAAAAAACGACTCTATTTACTTAAAATTTTATTATTAC AACCCAATGTGCTTTTGCTTGACGAACCAACCAATGACTTGGATATTGCAACCTTAACTGTACTTGAAAATTTCCTAGGC TCTTTTCCGGGTGCTGTTTTGACAGTTTCTCATGACCGCTATTTCCAAGATAAAGTGAGCAACGAATTACTTGCATTTGA AGATGGGCAAATTAATCATTATTTTGGGGCTTACAGTGACTATTTAGCTGTCAAAACGGAAGAAAAATCTGCTGACAAAG CTGTCAGTAAAATTGAAAGTCCAATAAGTACTGACAAAACTGAAAATACTGACAAAACGAAACTGACCTATATGGAAAAG AAAGAATGGGAAACCATTGAAAGTCAAATTGCTGAAATTGAAGAGCGAATTTCTCAGATTGACACAGAAATGAATGAAAA TGGTTCAAATACAGAACTCCTACTGGATTTACAAAAAGAACTAGACAACAAAACAAAAGAACTTGAAGAAAAATATGAAC GTTGGGAATATCTATCAGAAAGGGCTGACTAA
Upstream 100 bases:
>100_bases ACTATCCAGCTTTTTTATCAGTAAAAAATTAAAGCCGTCATTACTGACAGGCTTTTTTGTGGTATAATCAAAGGTAATAT AAGAGAAATTAGGACGAAAA
Downstream 100 bases:
>100_bases AACATTATGACAACGCAAGAACTTATTGAAACCTTACAAAAATTTCCGGCAGAAGCAACTGTAAAAATCATTCAAAACGA TATCAGTGGTGACCGATTTT
Product: ABC transporter ATP binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 623; Mature: 622
Protein sequence:
>623_residues MADFIAQNLSKSVGEKMVFNKINFIIHDLDRIGLLGVNGTGKTTLLNVISGLSGFDGDRTPFDHPQNYKITYLTQEPDFN PKATILDTVLDDSLPQMRAIKNYEAALLDYENLAKLERAQSGMDALNAWQVEADVKTILTKLQLPDSATLIESLSGGQKR RVQLAQALVNDSDLLLLDEPTNHLDVETIAWLQNYLKNSRRTVLFVTHDRYFLDNVATRIFELEDAGLKEYQGNYQDYLA KKAEDEEREAAASHKAKQLYQSELTWIRKSPQARATKQQARIDRFEDLKDSMKTSKNLGDLELNIASSRLGKKVINFKNA AFSYPDRPIFKDFELIVQGHSRLGIVGDNGVGKSTLLNIIDGELALTDGILEIGETVKIGYFSQEIRGLDENKRMINFLE EVASAAHNSSGENISIVNLLEQFLFPRSSHGTLISKLSGGEKKRLYLLKILLLQPNVLLLDEPTNDLDIATLTVLENFLG SFPGAVLTVSHDRYFQDKVSNELLAFEDGQINHYFGAYSDYLAVKTEEKSADKAVSKIESPISTDKTENTDKTKLTYMEK KEWETIESQIAEIEERISQIDTEMNENGSNTELLLDLQKELDNKTKELEEKYERWEYLSERAD
Sequences:
>Translated_623_residues MADFIAQNLSKSVGEKMVFNKINFIIHDLDRIGLLGVNGTGKTTLLNVISGLSGFDGDRTPFDHPQNYKITYLTQEPDFN PKATILDTVLDDSLPQMRAIKNYEAALLDYENLAKLERAQSGMDALNAWQVEADVKTILTKLQLPDSATLIESLSGGQKR RVQLAQALVNDSDLLLLDEPTNHLDVETIAWLQNYLKNSRRTVLFVTHDRYFLDNVATRIFELEDAGLKEYQGNYQDYLA KKAEDEEREAAASHKAKQLYQSELTWIRKSPQARATKQQARIDRFEDLKDSMKTSKNLGDLELNIASSRLGKKVINFKNA AFSYPDRPIFKDFELIVQGHSRLGIVGDNGVGKSTLLNIIDGELALTDGILEIGETVKIGYFSQEIRGLDENKRMINFLE EVASAAHNSSGENISIVNLLEQFLFPRSSHGTLISKLSGGEKKRLYLLKILLLQPNVLLLDEPTNDLDIATLTVLENFLG SFPGAVLTVSHDRYFQDKVSNELLAFEDGQINHYFGAYSDYLAVKTEEKSADKAVSKIESPISTDKTENTDKTKLTYMEK KEWETIESQIAEIEERISQIDTEMNENGSNTELLLDLQKELDNKTKELEEKYERWEYLSERAD >Mature_622_residues ADFIAQNLSKSVGEKMVFNKINFIIHDLDRIGLLGVNGTGKTTLLNVISGLSGFDGDRTPFDHPQNYKITYLTQEPDFNP KATILDTVLDDSLPQMRAIKNYEAALLDYENLAKLERAQSGMDALNAWQVEADVKTILTKLQLPDSATLIESLSGGQKRR VQLAQALVNDSDLLLLDEPTNHLDVETIAWLQNYLKNSRRTVLFVTHDRYFLDNVATRIFELEDAGLKEYQGNYQDYLAK KAEDEEREAAASHKAKQLYQSELTWIRKSPQARATKQQARIDRFEDLKDSMKTSKNLGDLELNIASSRLGKKVINFKNAA FSYPDRPIFKDFELIVQGHSRLGIVGDNGVGKSTLLNIIDGELALTDGILEIGETVKIGYFSQEIRGLDENKRMINFLEE VASAAHNSSGENISIVNLLEQFLFPRSSHGTLISKLSGGEKKRLYLLKILLLQPNVLLLDEPTNDLDIATLTVLENFLGS FPGAVLTVSHDRYFQDKVSNELLAFEDGQINHYFGAYSDYLAVKTEEKSADKAVSKIESPISTDKTENTDKTKLTYMEKK EWETIESQIAEIEERISQIDTEMNENGSNTELLLDLQKELDNKTKELEEKYERWEYLSERAD
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=541, Percent_Identity=30.1293900184843, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI27881506, Length=534, Percent_Identity=31.2734082397004, Blast_Score=186, Evalue=8e-47, Organism=Homo sapiens, GI10947137, Length=534, Percent_Identity=31.2734082397004, Blast_Score=185, Evalue=1e-46, Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=30.0917431192661, Blast_Score=182, Evalue=1e-45, Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=30.0917431192661, Blast_Score=181, Evalue=1e-45, Organism=Homo sapiens, GI156105685, Length=221, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=3e-12, Organism=Escherichia coli, GI2367384, Length=547, Percent_Identity=35.2833638025594, Blast_Score=312, Evalue=3e-86, Organism=Escherichia coli, GI1787182, Length=607, Percent_Identity=32.6194398682043, Blast_Score=299, Evalue=4e-82, Organism=Escherichia coli, GI1789751, Length=639, Percent_Identity=29.1079812206573, Blast_Score=243, Evalue=3e-65, Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=29.3040293040293, Blast_Score=217, Evalue=2e-57, Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=30.7017543859649, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1788165, Length=213, Percent_Identity=27.6995305164319, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=29.3838862559242, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1787029, Length=244, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=22.9885057471264, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=28.8372093023256, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=23.8297872340426, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17559834, Length=544, Percent_Identity=29.7794117647059, Blast_Score=198, Evalue=9e-51, Organism=Caenorhabditis elegans, GI17553372, Length=540, Percent_Identity=30, Blast_Score=178, Evalue=7e-45, Organism=Caenorhabditis elegans, GI17555318, Length=529, Percent_Identity=27.4102079395085, Blast_Score=167, Evalue=1e-41, Organism=Caenorhabditis elegans, GI17541710, Length=199, Percent_Identity=32.6633165829146, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=518, Percent_Identity=31.0810810810811, Blast_Score=197, Evalue=5e-51, Organism=Saccharomyces cerevisiae, GI6321121, Length=530, Percent_Identity=29.622641509434, Blast_Score=183, Evalue=9e-47, Organism=Saccharomyces cerevisiae, GI6323278, Length=384, Percent_Identity=27.0833333333333, Blast_Score=142, Evalue=1e-34, Organism=Saccharomyces cerevisiae, GI6324314, Length=387, Percent_Identity=26.6149870801034, Blast_Score=130, Evalue=4e-31, Organism=Saccharomyces cerevisiae, GI6325030, Length=402, Percent_Identity=27.8606965174129, Blast_Score=127, Evalue=6e-30, Organism=Saccharomyces cerevisiae, GI6320266, Length=503, Percent_Identity=23.8568588469185, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI24666836, Length=547, Percent_Identity=31.6270566727605, Blast_Score=216, Evalue=3e-56, Organism=Drosophila melanogaster, GI24641342, Length=545, Percent_Identity=29.9082568807339, Blast_Score=209, Evalue=6e-54, Organism=Drosophila melanogaster, GI24642252, Length=525, Percent_Identity=28.952380952381, Blast_Score=175, Evalue=7e-44, Organism=Drosophila melanogaster, GI18859989, Length=525, Percent_Identity=28.952380952381, Blast_Score=175, Evalue=7e-44, Organism=Drosophila melanogaster, GI17136662, Length=262, Percent_Identity=25.5725190839695, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70445; Mature: 70314
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADFIAQNLSKSVGEKMVFNKINFIIHDLDRIGLLGVNGTGKTTLLNVISGLSGFDGDRT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCC PFDHPQNYKITYLTQEPDFNPKATILDTVLDDSLPQMRAIKNYEAALLDYENLAKLERAQ CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHH SGMDALNAWQVEADVKTILTKLQLPDSATLIESLSGGQKRRVQLAQALVNDSDLLLLDEP HCHHHHHHEEEHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECC TNHLDVETIAWLQNYLKNSRRTVLFVTHDRYFLDNVATRIFELEDAGLKEYQGNYQDYLA CCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHH KKAEDEEREAAASHKAKQLYQSELTWIRKSPQARATKQQARIDRFEDLKDSMKTSKNLGD HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LELNIASSRLGKKVINFKNAAFSYPDRPIFKDFELIVQGHSRLGIVGDNGVGKSTLLNII EEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH DGELALTDGILEIGETVKIGYFSQEIRGLDENKRMINFLEEVASAAHNSSGENISIVNLL CCCHHHHHHHHHHCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH EQFLFPRSSHGTLISKLSGGEKKRLYLLKILLLQPNVLLLDEPTNDLDIATLTVLENFLG HHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH SFPGAVLTVSHDRYFQDKVSNELLAFEDGQINHYFGAYSDYLAVKTEEKSADKAVSKIES CCCCEEEEEECCHHHHHHHCCCEEEEECCCCEEECCCHHCEEEEECCHHHHHHHHHHHHC PISTDKTENTDKTKLTYMEKKEWETIESQIAEIEERISQIDTEMNENGSNTELLLDLQKE CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHH LDNKTKELEEKYERWEYLSERAD HCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ADFIAQNLSKSVGEKMVFNKINFIIHDLDRIGLLGVNGTGKTTLLNVISGLSGFDGDRT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCCCCCC PFDHPQNYKITYLTQEPDFNPKATILDTVLDDSLPQMRAIKNYEAALLDYENLAKLERAQ CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHH SGMDALNAWQVEADVKTILTKLQLPDSATLIESLSGGQKRRVQLAQALVNDSDLLLLDEP HCHHHHHHEEEHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECC TNHLDVETIAWLQNYLKNSRRTVLFVTHDRYFLDNVATRIFELEDAGLKEYQGNYQDYLA CCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHH KKAEDEEREAAASHKAKQLYQSELTWIRKSPQARATKQQARIDRFEDLKDSMKTSKNLGD HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LELNIASSRLGKKVINFKNAAFSYPDRPIFKDFELIVQGHSRLGIVGDNGVGKSTLLNII EEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH DGELALTDGILEIGETVKIGYFSQEIRGLDENKRMINFLEEVASAAHNSSGENISIVNLL CCCHHHHHHHHHHCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH EQFLFPRSSHGTLISKLSGGEKKRLYLLKILLLQPNVLLLDEPTNDLDIATLTVLENFLG HHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH SFPGAVLTVSHDRYFQDKVSNELLAFEDGQINHYFGAYSDYLAVKTEEKSADKAVSKIES CCCCEEEEEECCHHHHHHHCCCEEEEECCCCEEECCCHHCEEEEECCHHHHHHHHHHHHC PISTDKTENTDKTKLTYMEKKEWETIESQIAEIEERISQIDTEMNENGSNTELLLDLQKE CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHH LDNKTKELEEKYERWEYLSERAD HCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141694; 9384377 [H]