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The map label for this gene is yfdC

Identifier: 15672528

GI number: 15672528

Start: 532638

End: 533024

Strand: Direct

Name: yfdC

Synonym: L132585

Alternate gene names: 15672528

Gene position: 532638-533024 (Clockwise)

Preceding gene: 15672527

Following gene: 15672529

Centisome position: 22.52

GC content: 36.43

Gene sequence:

>387_bases
GTGATTGATTTATATTTGTCGCCATCATGTACCAGTTGCCGTAAAGCGCGCGCTTGGTTGCAAAGCCATAAGGTTCCCTT
TGTAGAGCACAACATTTTGACACAACCGATGACAACAAACGATTTGCGTCATATCTTGACGAAAACGGAAAATGGAACAG
AAGATATTATTTCGACACGGTCAAAAGTTTTTCAAAAATTGGCTGTGGATGTTGATAATTTGACTATTAATGAATTATTA
GACTTGGTAACAGAATTTCCAAATCTATTAAGACGTCCAATTATTACTGACTCAAAACACCTACAAATTGGCTTTAACGA
GGATGAAATTCGTGCATTTTTGCCACGTGAATATCGTCGAGCAGAAATGTTAAGTACAATAGATTAA

Upstream 100 bases:

>100_bases
ATTAATTTTGATATAATACTTAGCAGATGTAAATTAGTTTTTATCCAATGAGGAGAAAAATAAACTTACTGATAATTTTA
AAAGGATGGGAAATAGGACT

Downstream 100 bases:

>100_bases
GATTTAGGCAGCAAAATTTACTGACAACAATTCTGTCAGTAAATTTTTGCTGAATTTTATAGATTTTTTAGCCTGAACGG
GCAGGAGAAGCATGAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MIDLYLSPSCTSCRKARAWLQSHKVPFVEHNILTQPMTTNDLRHILTKTENGTEDIISTRSKVFQKLAVDVDNLTINELL
DLVTEFPNLLRRPIITDSKHLQIGFNEDEIRAFLPREYRRAEMLSTID

Sequences:

>Translated_128_residues
MIDLYLSPSCTSCRKARAWLQSHKVPFVEHNILTQPMTTNDLRHILTKTENGTEDIISTRSKVFQKLAVDVDNLTINELL
DLVTEFPNLLRRPIITDSKHLQIGFNEDEIRAFLPREYRRAEMLSTID
>Mature_128_residues
MIDLYLSPSCTSCRKARAWLQSHKVPFVEHNILTQPMTTNDLRHILTKTENGTEDIISTRSKVFQKLAVDVDNLTINELL
DLVTEFPNLLRRPIITDSKHLQIGFNEDEIRAFLPREYRRAEMLSTID

Specific function: Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes invo

COG id: COG1393

COG function: function code P; Arsenate reductase and related proteins, glutaredoxin family

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ArsC family. Spx subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SPX1_LACLA (Q9CI20)

Other databases:

- EMBL:   AE005176
- PIR:   B86693
- RefSeq:   NP_266702.1
- ProteinModelPortal:   Q9CI20
- SMR:   Q9CI20
- GeneID:   1114165
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L132585
- NMPDR:   fig|272623.1.peg.561
- HOGENOM:   HBG734370
- OMA:   FTERNIF
- ProtClustDB:   CLSK697282
- BioCyc:   LLAC272623:L132585-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01132
- InterPro:   IPR006660
- InterPro:   IPR012336
- InterPro:   IPR012335
- InterPro:   IPR006504
- Gene3D:   G3DSA:3.40.30.10
- TIGRFAMs:   TIGR01617

Pfam domain/function: PF03960 ArsC; SSF52833 Thiordxn-like_fd

EC number: NA

Molecular weight: Translated: 14867; Mature: 14867

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51353 ARSC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLYLSPSCTSCRKARAWLQSHKVPFVEHNILTQPMTTNDLRHILTKTENGTEDIISTR
CEEEEECCCCHHHHHHHHHHHHCCCCCHHCHHCCCCCCHHHHHHHHHCCCCCHHHHHHHH
SKVFQKLAVDVDNLTINELLDLVTEFPNLLRRPIITDSKHLQIGFNEDEIRAFLPREYRR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHCCHHHHH
AEMLSTID
HHHHHHCC
>Mature Secondary Structure
MIDLYLSPSCTSCRKARAWLQSHKVPFVEHNILTQPMTTNDLRHILTKTENGTEDIISTR
CEEEEECCCCHHHHHHHHHHHHCCCCCHHCHHCCCCCCHHHHHHHHHCCCCCHHHHHHHH
SKVFQKLAVDVDNLTINELLDLVTEFPNLLRRPIITDSKHLQIGFNEDEIRAFLPREYRR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHCCHHHHH
AEMLSTID
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471