Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is nifZ
Identifier: 15672519
GI number: 15672519
Start: 522216
End: 523361
Strand: Direct
Name: nifZ
Synonym: L122222
Alternate gene names: 15672519
Gene position: 522216-523361 (Clockwise)
Preceding gene: 15672518
Following gene: 15672520
Centisome position: 22.08
GC content: 37.96
Gene sequence:
>1146_bases ATGATATATTTTGATAATTCTGCTACGACAGCAGTTAATCCAATGGTTTTACGAACTTATACAGATGTTGCAACAAAAAT TATGGGAAATCCGTCAAGTCTACATGGTTTGGGGACAACAGCGACGAGATTATTAGAGGCTTCAAGACGACAAATTGCTG AACTGTTGGGAGTCGATTCACAAGAAATATTTTTTACAAGTGGAGGGACTGAAGGAGATAATTGGATTTTAAAGGGTGTC GCTTTTGAAAAGCGTCCTTATGGTAATCACATCATTGTTTCTAATGTAGAGCATCCAGCTGTAAAAAATACAGCAGAATG GTTAAAAACGCAAGGTTTTGAAGTTGATTTTGCACCTGTTGATGGGGATGGTTTTGTTATTGTTTCTGAGCTTGAAAAAT TGATTAGAGATGAAACGATTTTGATTTCAATTATGGCAGTCAATAATGAGGTTGGAACCATTCAACCGATTGGCGAAATT TCTGACCTACTTGCTGATAAGCCAACAATTTCTTTTCATGTAGATGCAGTACAGGCCATTGGTAAAATTCCATTAGAGGC TTGGTTGACAGAGCGGGTAGATTTCGCGGTTTTATCTGCTCATAAATTTCATGGGCCACGTGGTGTGGGAATTGTTGTTG CAAAAAAAGGGAAAAGACTGACTCCGCTTTTACATGGGGGAGGTCAAGAGCATAATTGGCGTTCGACTACAGAAAATTTA GCTGGAATTGCTGCGACTTCTAAAGCCCTTCGTTTAGCTTTAGATGATGATGACTTTAAACGTCAAAAAGTACGAGCAAT GAAGCAGGTGATTTTAGAAGAGTTAGAAAAGCATCGAAAAGTTCATGTTTTTAGTAAAGTGGAGAATTTTGCTCCTAACA TTTTGACCTTTGGGATTCGTGGGGTTAGAGGTGAGGTCGTTGTTCACGCTTTTGAACAACATGAAATCTATATTTCGACA ACCTCAGCTTGTTCTTCAAAGAAAAATGCGGCGGCTGGAACTTTAGTTGCGATGAATGTCCCTTCAAAATTAGCAACAAG TGCGGTCAGGATTTCTCTTGATTCAACAAATAATATGGCTGAAGTTGAACAATTTTTGACTGTTTTTCGACAAATTTATC AAGAATTAGAAAAAGTAAGTGGTTAA
Upstream 100 bases:
>100_bases TTTTTTATGGTAATTTAATCATCATTCTTATATTTTAGTCAAACTTTTCGGTATTTTTTGTGTTAAAATAAGATTGATTT TTAAATATTAAGGATAAAAA
Downstream 100 bases:
>100_bases ATATTTTATAAAAGTGATTTGAAGATAATTTCAAACCACTTTTCTTATCCAAATCTTAAATTGTTCTTATTAAGTTATCA TTAAACTTGGAGTGGTATAA
Product: pyridoxal-phosphate dependent aminotransferase
Products: L-alanine; S [C]
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGV AFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEI SDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYIST TSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQELEKVSG
Sequences:
>Translated_381_residues MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGV AFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEI SDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYIST TSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQELEKVSG >Mature_381_residues MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGV AFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEI SDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYIST TSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQELEKVSG
Specific function: Fe-S cluster biosynthesis [C]
COG id: COG1104
COG function: function code E; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily [H]
Homologues:
Organism=Homo sapiens, GI32307132, Length=383, Percent_Identity=31.331592689295, Blast_Score=197, Evalue=1e-50, Organism=Homo sapiens, GI156713448, Length=414, Percent_Identity=31.1594202898551, Blast_Score=171, Evalue=9e-43, Organism=Escherichia coli, GI48994898, Length=385, Percent_Identity=34.8051948051948, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1787970, Length=369, Percent_Identity=25.7452574525745, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1789175, Length=365, Percent_Identity=24.6575342465753, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25143064, Length=359, Percent_Identity=33.1476323119777, Blast_Score=185, Evalue=3e-47, Organism=Caenorhabditis elegans, GI17533177, Length=336, Percent_Identity=29.1666666666667, Blast_Score=141, Evalue=5e-34, Organism=Saccharomyces cerevisiae, GI6319831, Length=365, Percent_Identity=34.7945205479452, Blast_Score=202, Evalue=1e-52, Organism=Drosophila melanogaster, GI20129463, Length=370, Percent_Identity=34.0540540540541, Blast_Score=195, Evalue=4e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR016454 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: NA
Molecular weight: Translated: 41801; Mature: 41801
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS CEEECCCCCCCCCCEEEEHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCC QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV CEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEE DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI CCCCEEEHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEHHHHHHH GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL HCCCHHHHHHHHCCCEEEEHHHCCCCCCEEEEEECCCCEECHHHCCCCCCCCCCCHHHHH AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIR HHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCEEEECCC GVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMA CCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHCEEEEEEECCCCCHH EVEQFLTVFRQIYQELEKVSG HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS CEEECCCCCCCCCCEEEEHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCC QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV CEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEE DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI CCCCEEEHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEHHHHHHH GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL HCCCHHHHHHHHCCCEEEEHHHCCCCCCEEEEEECCCCEECHHHCCCCCCCCCCCHHHHH AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIR HHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCEEEECCC GVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMA CCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHCEEEEEEECCCCCHH EVEQFLTVFRQIYQELEKVSG HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: Pyridoxal Phosphate. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-cysteine [C]
Specific reaction: L-cysteine = L-alanine + S [C]
General reaction: transfers sulfane sulfur to ThiI during in vitro biosynthesis of 4-thiouridine in E. coli tRNA [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8031904 [H]