Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is rgrA
Identifier: 15672407
GI number: 15672407
Start: 436511
End: 437227
Strand: Reverse
Name: rgrA
Synonym: L0150
Alternate gene names: 15672407
Gene position: 437227-436511 (Counterclockwise)
Preceding gene: 15672412
Following gene: 15672386
Centisome position: 18.48
GC content: 36.26
Gene sequence:
>717_bases ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA
Upstream 100 bases:
>100_bases TATCTTTTGAAGTTGTACGTACAAGTTAACAAAATCATTGTATCATATAAAAACGTTTTCAGCAAGCGGTAACAATTATT TTTATGATAAAATATAAAGT
Downstream 100 bases:
>100_bases AAAAGCTCTCCCAATAAGGAGAGTTTTTACTTGATAATAAAAAGCAAGAACAAAATCAGTTCTTGCTTTTTTTCTTTATT TTACACCAATTTCTGCTTCA
Product: GntR family transcription regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR
Sequences:
>Translated_238_residues MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR >Mature_238_residues MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR
Specific function: Repressor for the trehalose operon (treP and treA). Binds trehalose-6-phosphate, which probably acts as an inducer [H]
COG id: COG2188
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790540, Length=238, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790118, Length=169, Percent_Identity=27.2189349112426, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=24.4635193133047, Blast_Score=64, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000524 - InterPro: IPR012770 - InterPro: IPR011663 - InterPro: IPR011991 [H]
Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]
EC number: NA
Molecular weight: Translated: 27866; Mature: 27866
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRH CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHEECC GYGSIVLAHDRLLFPISGLTSYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEH CCCEEEEECCCEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHH AISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTYDYLEDTLGLDIAYAQKEVTI HHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCEECHHHHHHHHHCCEEEEECEEEEE DFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR EEEECCCCEEEECCCCCCEEEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRH CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHEECC GYGSIVLAHDRLLFPISGLTSYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEH CCCEEEEECCCEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHH AISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTYDYLEDTLGLDIAYAQKEVTI HHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCEECHHHHHHHHHCCEEEEECEEEEE DFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR EEEECCCCEEEECCCCCCEEEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8917076; 8969503; 9384377; 7651129; 8755887 [H]