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The map label for this gene is yeeB

Identifier: 15672412

GI number: 15672412

Start: 442772

End: 443578

Strand: Reverse

Name: yeeB

Synonym: L42784

Alternate gene names: 15672412

Gene position: 443578-442772 (Counterclockwise)

Preceding gene: 15672418

Following gene: 15672407

Centisome position: 18.75

GC content: 37.17

Gene sequence:

>807_bases
TTGATATTTCTTTCAACCCTTTTTTGGTACAATAAACTTATGAATAAATCAACGTTTTCTTTAAATGATACTGCATGGGT
TGATTTTTATCAGCTCCAAAATCCTCGTCAAAACGAAAATTATACTTTTCCTGCTATTATTATCTGCCCTGGTGGTGGTT
ATCAACATATTTCACAAAGAGAATCTGACCCTCTTGCCTTAGCTTTTCTCGCCCAAGGTTATCAAGTGCTTCTCCTTAAT
TACACCGTGATGAATAAAGGAACAAACTATAACTTTTTATCACAAAATCTTGAAGAAGTTCAAGCTGTTTTTTCTCTGAT
TCATCAAAATCATAAAGAATGGCAAATCAATCCTGAGCAAGTTTTCTTACTTGGTTGCTCTGCCGGAGGGCATCTAGCCG
CTTGGTATGGTAATTCTGAACAAATCCATCGACCAAAAGGAGTTATTCTCTGCTATCCAGTAACTTCCTTCACTTTTGGT
TGGCCTAGTGATTTGTCACATTTTAATTTTGAAATTGAAAATATCTCAGAATATAATATTTCGGAAAAAGTCACTTCCTC
AACTCCTCCAACCTTTATTTGGCATACGGCTGATGATGAGGGTGTTCCTATCTATAACAGCCTTAAATATTGTGATCGAC
TCTCAAAACATCAAGTTCCTTTTGAAGCTCACTTTTTTGAATCTGGACCTCATGGTGTCTCTTTGGCTAATCGGACAACC
GCTCCTTCTGATGCCTATTGTCTTCCGTCAGTGCATCGCTGGGTTTCTTGGGCTTCTGATTGGTTGGAAAGACAAATCAA
AAATTAA

Upstream 100 bases:

>100_bases
GACCTATACTATAAATAATTTTCTTCATAATCAAATTCTATGATAGTTTTCTTAAACGAACTTAAAATTTATTAATGTAA
TAAATAAACAACGAGGTATT

Downstream 100 bases:

>100_bases
AAATACCACTCAAAAGTGGTATTTTTTTATTGGTTTTATCTAATTTATTAATTACGAATCATTTTTGCTTTTGAAGCCAA
ACTTCTTTCAAAAATTCTAA

Product: sugar hydrolase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MIFLSTLFWYNKLMNKSTFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLN
YTVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFG
WPSDLSHFNFEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRTT
APSDAYCLPSVHRWVSWASDWLERQIKN

Sequences:

>Translated_268_residues
MIFLSTLFWYNKLMNKSTFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLN
YTVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFG
WPSDLSHFNFEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRTT
APSDAYCLPSVHRWVSWASDWLERQIKN
>Mature_268_residues
MIFLSTLFWYNKLMNKSTFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLN
YTVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFG
WPSDLSHFNFEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRTT
APSDAYCLPSVHRWVSWASDWLERQIKN

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 30787; Mature: 30787

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFLSTLFWYNKLMNKSTFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQR
CEEHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHC
ESDPLALAFLAQGYQVLLLNYTVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQ
CCCCEEEEEHHCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHE
VFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDLSHFNFEIENISEYNI
EEEEEECCCCEEEEEECCCCCEECCCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCCCC
SEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRTT
CHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCCCC
APSDAYCLPSVHRWVSWASDWLERQIKN
CCCCCEECHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIFLSTLFWYNKLMNKSTFSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQR
CEEHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHC
ESDPLALAFLAQGYQVLLLNYTVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQ
CCCCEEEEEHHCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHE
VFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDLSHFNFEIENISEYNI
EEEEEECCCCEEEEEECCCCCEECCCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCCCC
SEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRTT
CHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCCCC
APSDAYCLPSVHRWVSWASDWLERQIKN
CCCCCEECHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]