Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
---|---|
Accession | NC_002662 |
Length | 2,365,589 |
Click here to switch to the map view.
The map label for this gene is ptcB
Identifier: 15672395
GI number: 15672395
Start: 418876
End: 419202
Strand: Direct
Name: ptcB
Synonym: L18872
Alternate gene names: 15672395
Gene position: 418876-419202 (Clockwise)
Preceding gene: 15672394
Following gene: 15672396
Centisome position: 17.71
GC content: 40.98
Gene sequence:
>327_bases ATGGCAGATAAAGTTATTGCACTTGCATGTGCAGCCGGTATGTCAACATCACTTTTGGTATCAAAAATGCAAAAAGCAGC AGCAGATAACGGGAAAGATTACGAAATTTTCGCAAAATCAACAGCGGATATTGATAACATGCTTGCCGGAACAGGCTCAC CAAAACCTGACGTTCTTCTTTTAGGCCCACAAGTTGCCTTCATGAAAGGTGAAGTTGCTAAAAAAGCTGAAATCGCTGGT GTGCCAATGGACGTTATCAAAATGCAAGATTATGGAATGATGCGCGGAGATAAAGTTCTTGCAGCAGCTGAAAACTTGAT GAATTAA
Upstream 100 bases:
>100_bases CAAAAAATAGATAACGCTTGCATTATGAAAATGAAAACGTTATAATTATTTTTATAAAGAACGTTAAATTATAAAACGTT AAGAATAAGGAGAAATAATT
Downstream 100 bases:
>100_bases GGTTTGAAAATTTCAAACTTGTGAAAGAGCGAAAGCTCTTTTACTATGTAAATATCTAAGCAAAGAGAAATGGGAAGATA AGAAATGACTGATAAATACG
Product: cellobiose-specific PTS system IIB component
Products: NA
Alternate protein names: EIIB-Lic; PTS system lichenan-specific EIIB component [H]
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MADKVIALACAAGMSTSLLVSKMQKAAADNGKDYEIFAKSTADIDNMLAGTGSPKPDVLLLGPQVAFMKGEVAKKAEIAG VPMDVIKMQDYGMMRGDKVLAAAENLMN
Sequences:
>Translated_108_residues MADKVIALACAAGMSTSLLVSKMQKAAADNGKDYEIFAKSTADIDNMLAGTGSPKPDVLLLGPQVAFMKGEVAKKAEIAG VPMDVIKMQDYGMMRGDKVLAAAENLMN >Mature_107_residues ADKVIALACAAGMSTSLLVSKMQKAAADNGKDYEIFAKSTADIDNMLAGTGSPKPDVLLLGPQVAFMKGEVAKKAEIAGV PMDVIKMQDYGMMRGDKVLAAAENLMN
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1440
COG function: function code G; Phosphotransferase system cellobiose-specific component IIB
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-3 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014350 - InterPro: IPR003501 - InterPro: IPR013012 [H]
Pfam domain/function: PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 11310; Mature: 11179
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS51100 PTS_EIIB_TYPE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 9.3 %Met (Translated Protein) 10.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 8.4 %Met (Mature Protein) 9.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKVIALACAAGMSTSLLVSKMQKAAADNGKDYEIFAKSTADIDNMLAGTGSPKPDVLL CCCHHEEEHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEE LGPQVAFMKGEVAKKAEIAGVPMDVIKMQDYGMMRGDKVLAAAENLMN ECCCEEECCCCHHCHHHHCCCCHHHEEECCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure ADKVIALACAAGMSTSLLVSKMQKAAADNGKDYEIFAKSTADIDNMLAGTGSPKPDVLL CCHHEEEHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEE LGPQVAFMKGEVAKKAEIAGVPMDVIKMQDYGMMRGDKVLAAAENLMN ECCCEEECCCCHHCHHHHCCCCHHHEEECCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377 [H]