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The map label for this gene is yebF

Identifier: 15672394

GI number: 15672394

Start: 417888

End: 418634

Strand: Direct

Name: yebF

Synonym: L17893

Alternate gene names: 15672394

Gene position: 417888-418634 (Clockwise)

Preceding gene: 15672393

Following gene: 15672395

Centisome position: 17.67

GC content: 34.67

Gene sequence:

>747_bases
ATGATGTTTCTACCCGAACAAATCAGTAAACTTAACGAGCTTGAAACGCTAGTTTTTGATTTTATCATTAAATCACCTGA
AGAAGTCCAACAAATGACGATTCGTGATTTAGCAAGTCAAGCCCATGTTTCAACTTCGACAATTGTCCGACTATGTACAA
AACTTGGTTTTGAAGGTTGGTCTGATTTAAAATTTTACCTCAAAAATCAACTCAAAGAAAAAACACCAGAAGAGCAACAT
TATGATAATATGCTCGAATTCAACATGTTTTTACGTCGAATGAATACAGATAATTATCAGGCAAAACTCAATAATGCTGC
ACAAATGATTGCTAAAGCTGATTATACCGTGTTTTTAGGTTTAGGAACATCTGGTTCATTAAGTGAGTATGCTACTAAAT
ATTTTGTAAATACTGGATTACGAAGCTTCGTTATTTCTGACCCGTTTCAAGCTGTTCAAGTTCAGGGAATGGGAAATGTT
GTGGCAGTAATCATGTCTGTGTCAGGTGAAACAGAACAAGTTGTTAATAAAGAATTGGAGTTTAAAGCGGGCGGAGCAAA
AATTATTTCGATTACAAATAATGAAGATTGCACCGTTGCTAAACTTGCTGATTACCAACTCTCGTACAATCTTGTTAACG
AATGGTCCAAACAGTATCCGTTAGGAAATCTGACCACGCAACTCCCAGTACTAGCTATTTTAGAAATTTTAGCTCATAAA
TCGATTGATTATCATCTTAAAAAATAA

Upstream 100 bases:

>100_bases
TGCTAAAATTTGGCAAATCCTTTCAAACAATGATTCTGTCAGTAAATTTTTAAAAGAATTTGTGGCGGAGCTAAATATTT
CCAAATACGGAGAGTAAAAA

Downstream 100 bases:

>100_bases
TAAATTTGTTCCAAAAAGAGAAACAAATATTTCAAAAAGCCACTATTTGATAGTAGCTTTTTTATTTTATGCCATAAAAG
TCGCCTAAAGGTTGCTATAA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MMFLPEQISKLNELETLVFDFIIKSPEEVQQMTIRDLASQAHVSTSTIVRLCTKLGFEGWSDLKFYLKNQLKEKTPEEQH
YDNMLEFNMFLRRMNTDNYQAKLNNAAQMIAKADYTVFLGLGTSGSLSEYATKYFVNTGLRSFVISDPFQAVQVQGMGNV
VAVIMSVSGETEQVVNKELEFKAGGAKIISITNNEDCTVAKLADYQLSYNLVNEWSKQYPLGNLTTQLPVLAILEILAHK
SIDYHLKK

Sequences:

>Translated_248_residues
MMFLPEQISKLNELETLVFDFIIKSPEEVQQMTIRDLASQAHVSTSTIVRLCTKLGFEGWSDLKFYLKNQLKEKTPEEQH
YDNMLEFNMFLRRMNTDNYQAKLNNAAQMIAKADYTVFLGLGTSGSLSEYATKYFVNTGLRSFVISDPFQAVQVQGMGNV
VAVIMSVSGETEQVVNKELEFKAGGAKIISITNNEDCTVAKLADYQLSYNLVNEWSKQYPLGNLTTQLPVLAILEILAHK
SIDYHLKK
>Mature_248_residues
MMFLPEQISKLNELETLVFDFIIKSPEEVQQMTIRDLASQAHVSTSTIVRLCTKLGFEGWSDLKFYLKNQLKEKTPEEQH
YDNMLEFNMFLRRMNTDNYQAKLNNAAQMIAKADYTVFLGLGTSGSLSEYATKYFVNTGLRSFVISDPFQAVQVQGMGNV
VAVIMSVSGETEQVVNKELEFKAGGAKIISITNNEDCTVAKLADYQLSYNLVNEWSKQYPLGNLTTQLPVLAILEILAHK
SIDYHLKK

Specific function: Represses The Expression Of The Hex Regulon (Zwf, Eda, Glp And Gap) (By Similarity). [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788159, Length=244, Percent_Identity=24.1803278688525, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 28075; Mature: 28075

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00356 HTH_LACI_1 ; PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFLPEQISKLNELETLVFDFIIKSPEEVQQMTIRDLASQAHVSTSTIVRLCTKLGFEGW
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCH
SDLKFYLKNQLKEKTPEEQHYDNMLEFNMFLRRMNTDNYQAKLNNAAQMIAKADYTVFLG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEE
LGTSGSLSEYATKYFVNTGLRSFVISDPFQAVQVQGMGNVVAVIMSVSGETEQVVNKELE
ECCCCCHHHHHHHHHHHHCHHHHHHCCCHHHEEECCCCHHHHHHHHCCCCHHHHHHHHHE
FKAGGAKIISITNNEDCTVAKLADYQLSYNLVNEWSKQYPLGNLTTQLPVLAILEILAHK
EECCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
SIDYHLKK
CCCCCCCC
>Mature Secondary Structure
MMFLPEQISKLNELETLVFDFIIKSPEEVQQMTIRDLASQAHVSTSTIVRLCTKLGFEGW
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCH
SDLKFYLKNQLKEKTPEEQHYDNMLEFNMFLRRMNTDNYQAKLNNAAQMIAKADYTVFLG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEE
LGTSGSLSEYATKYFVNTGLRSFVISDPFQAVQVQGMGNVVAVIMSVSGETEQVVNKELE
ECCCCCHHHHHHHHHHHHCHHHHHHCCCHHHEEECCCCHHHHHHHHCCCCHHHHHHHHHE
FKAGGAKIISITNNEDCTVAKLADYQLSYNLVNEWSKQYPLGNLTTQLPVLAILEILAHK
EECCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
SIDYHLKK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]