Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is yebB
Identifier: 15672389
GI number: 15672389
Start: 411078
End: 412121
Strand: Direct
Name: yebB
Synonym: L11083
Alternate gene names: 15672389
Gene position: 411078-412121 (Clockwise)
Preceding gene: 15672388
Following gene: 15672390
Centisome position: 17.38
GC content: 35.25
Gene sequence:
>1044_bases ATGAAAACTGAAAAAGAAATCCATCAACATCGCAAAGATGAACACTTATCGTTAGCTTATAAATATTGGCGTGAAGAAAA AAATCAGACCTCGGGCCTGACTTTTTCTGATAGTCGAATCATTCCTAATAGTTTGCCAGAATTATCTACTAAAAAAATCA ACTTTTCATCAGAAGTATTTGGACAGAATTTTGAATTTCCTTTTTATATTGAAGCGATGACTGGTGGAACAGAGCGAGCA GATAAAATCAATGCTCAATTAGCAGAAATTGCGAAAAATCAACATTTAGCCATGGCGGTCGGCTCTCAATCGATTGCTTT GAAATTTCCAGAACTAGCTGCTGGTTTCAGTGAAGTTCGTAAAATACACTCTTCTGGTTTTCTTTTTGCCAATATCGGCG CAGGTCATTCTCTAGAAAATGCCAAGCGAGCGGTGGATATGATTGAGGCAAATGCTTTAGAAATCCATGTCAATACAGCG CAAGAATTGCCAATGGATGAAGGAGACCGTGAATTTTATTGGTTAGAAAATATTAATGAAATTGCAAGTCAATTAGAAGT TCCAGTCGTTGTCAAAGAGGTCGGTTTTGGAATATCACAAAAAACCTTTAAAGCACTCGCAAAAACATCTGTCTCAGGAA TAAATATTGGGGGAGCTGGCGGAACTAATTTTGCTTGGATTGAACGTAAACGGAGTAAAAATGGTTTTAACTTGGATGAA TTTGGTTTGTCAACGCTTGAGAGCCTTTTAGAAGCTAAAATGGCTGATAATAGAAAAAGTTTGATTGCAACAGGTGGAAT TACTTCGGCTCAAGAGATTTTTAAATCTTTAATTTTAGGGGCTGATTTGTCAAGTTCTGCTGGTTTTATCTTGAAAAATC TTATGCAAACAGGGCCTGAAAAAGTAGAAGAAGTTATTGAACAATGGAAACAAGATTTGAATAAATTATTTGTTTTAACT GGTTCAAAAAATATTGAAGAATGTCGAAAGGTTGAGCTCCTTTACTCGATTAATATGCTTAATTTTATCCAACAAAGAAA ATAA
Upstream 100 bases:
>100_bases TATGGAATCAATCTTGAAAAATTTAAGGTTGCTCAAAAAAATAACTGAGATAAGTCTGCTAAAAAGCAGAGTTAGATTTT AATGAATTGAGAAATAACTG
Downstream 100 bases:
>100_bases TAAATTACAAATCAAATCATTTGGCAATGGTTTCAAAAACGACTATAATGAGAATAGAATTAAAAAAATAAACTAACTGA ATTCATTCTCAATCTAGTCA
Product: isopentenyl pyrophosphate isomerase
Products: NA
Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVFGQNFEFPFYIEAMTGGTERA DKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVRKIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTA QELPMDEGDREFYWLENINEIASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPEKVEEVIEQWKQDLNKLFVLT GSKNIEECRKVELLYSINMLNFIQQRK
Sequences:
>Translated_347_residues MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVFGQNFEFPFYIEAMTGGTERA DKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVRKIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTA QELPMDEGDREFYWLENINEIASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPEKVEEVIEQWKQDLNKLFVLT GSKNIEECRKVELLYSINMLNFIQQRK >Mature_347_residues MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVFGQNFEFPFYIEAMTGGTERA DKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVRKIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTA QELPMDEGDREFYWLENINEIASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPEKVEEVIEQWKQDLNKLFVLT GSKNIEECRKVELLYSINMLNFIQQRK
Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IPP isomerase type 2 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): IDI2_LACLA (Q9CIF5)
Other databases:
- EMBL: AE005176 - PIR: G86675 - RefSeq: NP_266563.1 - ProteinModelPortal: Q9CIF5 - SMR: Q9CIF5 - GeneID: 1114018 - GenomeReviews: AE005176_GR - KEGG: lla:L11083 - NMPDR: fig|272623.1.peg.415 - HOGENOM: HBG354479 - OMA: GSQRAAI - ProtClustDB: PRK05437 - BioCyc: LLAC272623:L11083-MONOMER - BRENDA: 5.3.3.2 - GO: GO:0005737 - HAMAP: MF_00354 - InterPro: IPR013785 - InterPro: IPR000262 - InterPro: IPR011179 - Gene3D: G3DSA:3.20.20.70 - PANTHER: PTHR10578:SF3 - PIRSF: PIRSF003314 - TIGRFAMs: TIGR02151
Pfam domain/function: PF01070 FMN_dh
EC number: =5.3.3.2
Molecular weight: Translated: 38686; Mature: 38686
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS00583 PFKB_KINASES_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVF CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHC GQNFEFPFYIEAMTGGTERADKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVR CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHCCHHHHH KIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTAQELPMDEGDREFYWLENINE HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEHHHHHH IASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE HHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCEEEEHHCCCCCCHHH FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPE HHHHHHHHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHH KVEEVIEQWKQDLNKLFVLTGSKNIEECRKVELLYSINMLNFIQQRK HHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKTEKEIHQHRKDEHLSLAYKYWREEKNQTSGLTFSDSRIIPNSLPELSTKKINFSSEVF CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHC GQNFEFPFYIEAMTGGTERADKINAQLAEIAKNQHLAMAVGSQSIALKFPELAAGFSEVR CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECHHHHCCHHHHH KIHSSGFLFANIGAGHSLENAKRAVDMIEANALEIHVNTAQELPMDEGDREFYWLENINE HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEHHHHHH IASQLEVPVVVKEVGFGISQKTFKALAKTSVSGINIGGAGGTNFAWIERKRSKNGFNLDE HHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCEEEEHHCCCCCCHHH FGLSTLESLLEAKMADNRKSLIATGGITSAQEIFKSLILGADLSSSAGFILKNLMQTGPE HHHHHHHHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHH KVEEVIEQWKQDLNKLFVLTGSKNIEECRKVELLYSINMLNFIQQRK HHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11337471