Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
---|---|
Accession | NC_002662 |
Length | 2,365,589 |
Click here to switch to the map view.
The map label for this gene is pbp2B
Identifier: 15672321
GI number: 15672321
Start: 337709
End: 339874
Strand: Direct
Name: pbp2B
Synonym: L137682
Alternate gene names: 15672321
Gene position: 337709-339874 (Clockwise)
Preceding gene: 15672320
Following gene: 15672322
Centisome position: 14.28
GC content: 36.33
Gene sequence:
>2166_bases ATGTCAGATAATAAAAGAAAAAATGATAAGCGCAAGCAATCCGATAAGTCTAAAAAATCACATAAAGAAGTAAAAATTTT AAAAGATCCAACTAAATTAATTCCAAAACGAGTGAACCTCTTATTTTTTGTTATCTTTGTTTTGTTTATGATTTTAATTG GAAAGCTCTTCAATATGCAGGTATTGAATTCACATTTCTACGCCGAAAAATCAATTAGTGCAGGTGGAGATGTTCAAATT ATTGAAGGTGCGCCTCGCGGAAATATTTATGATGCAACAGGAAAAGCTTTGGCATCTACAGTTGCGGTACAGGCTGTTGA ATTTACAAGAAGTCAAAATGCTACTGCTGATGAAATTTATCAGGTAGCCAATAAGTTAGCAACTATTTTATCTAATAACA TTGATGTTGCTGATTTGACAACGCGTGATAAAAAAGACTATTTCTTGGCTAATTCTAAAAATCTAGAAAAAATAGCTAAT AGTTTATCTGAAAAGGAAAAGAAAGATAAACATGGTAATGATTTAAGTGGTTCACAAATTTATGATGTCGAATTAAGTAA AGTTAAAGATAGTGACTTGAATTTTACGGCAGAACAAACTTTTGCCGCAAAATTATTCAAAGAAATGAATAGTACCACTA CTTTTAACACTACTAAAATTGCTACTGGAAGTATTACAGCAGAGCAACAAGCGACAATTGCCGAACAAGAAGGCGATTTA CCAGGAATTACAATTGGAACTTCTTGGGACCGTTCATATGCTCAAAATTCTTTGACACCACTTATGGGAACTATTACTTC ACAAAAATCAGGAATTCCAGCAGAGGATTTGGATGCCTATCTTAAAAAAGGTTATCAACGTAATGACCGTGTGGGAACTG GGCTTCTTGAAAAGGGATACGAAAGTGAACTTCAAGGAACTCATAGTATTAGTAAGGTTAAATTTGACAAAAATGGTGAT GTTTCTGGAACAAAAACAATCCAAAAAGGAAAACGTGGGGATGATTTAAAATTAACTATTAACCTAGATTTCCAAAACGG GGTTAATAATATTGTTAAAACACAATTAGATCAACTGATTGCCCAAGGCTATGGTCAGTATAATAGAGGGGCTTATGCTG TTGTGTTAAATGTTAAAACGGGGGCAGTCTTAGCTTTATCTGGCTATCAACGAGATCCTAATACAGGAACAATTACGGAA AATACTTTAGGGACTTTCCAAAGTGTCTTCACACCGGGGTCTGTTGTCCAAATGGGAACATTGACTGCTGCTTGGAATGC TGGTGTAATTTCTGGAAATGACACTTTAACGGCGCAGTCTATTCAATTTAAAGATTCTAATCCTATCAATGACTGGTGGG GAGACGCTTCACCAATGGCTTTAACAGCTGTTGAAGCTTTGCAATATTCATCAAATACTTACATGATGCAATTGGCAATG AGAATGTTAGGTGCTCCTTATACGGCAGCTAATCAATTTTTGGATGATACCAACCGAGTAAAAGTTTATGAGCAGTTTCG TAAGGCTTTTGCTTCTTATGGTTTAGGGGCATCAACTGGTTTTGATATACCTGGAGAATCAACGGGATATCTCCCTTCAG CTAAATCTGAAGCGGCTTCTGGGGTCAATGTATTGTATGAATCATTTGGTCAGTATGATAATTATACGCCGCTTCAGTTG GCGGTTTATGCGGCAACTTTAGGAAATAACGGAACTCGTTTGTCACCACATATTGTTCAAGGAATTTATGAAGGTGGAAC TGACGGACAGCCTGGCACGCTTATCAAAAATATTACTCCTAAAATCATGGATAAGGTAAATATCACTCCCGATAATATGG ATGTTCTTCATCAGGGGATGTATGCTGTTGTTCATGGGGCTGGTGGATTGACTACTGGTCGTTCAATGGATTCATCAAAG GTTTCTATTTCTGGTAAAACAGGGACTTCCGAAAGTACAAAAGTATTGGCAGATGGTAGTCAAGTTATTGTAACAGCTAA TAATGCAGTGGCCTTTGCTCCTTCTGACAACCCAGAAATTGCTATTGCGGTTGTACTTCCAGATAATACTGAAAGTAATG CTTCAAGTGGAACAAAAGCAAACCAAAGTATTGTAACGGGAATTACTGATTTGTATTATTCAAATGAGGCTTTTCGTAAA AATTAA
Upstream 100 bases:
>100_bases AATCAAAATTGTAAGGAAAAGTTTTCATAAATGTGGTAAAATGTTTAAGTACAAATTTTGAATGTAAAAACTATTTATAA AACTCATTCTTGGAGTCGAA
Downstream 100 bases:
>100_bases AAAAAGTTCTCTCTGATAGGAGAGGCTTTTTATTTATAAGTGATTGAGAATTCTATCACCTTTCCTTTTCATTTTCAGTC TTTTATAGTAAAATTAATAA
Product: penicillin-binding protein 2B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 721; Mature: 720
Protein sequence:
>721_residues MSDNKRKNDKRKQSDKSKKSHKEVKILKDPTKLIPKRVNLLFFVIFVLFMILIGKLFNMQVLNSHFYAEKSISAGGDVQI IEGAPRGNIYDATGKALASTVAVQAVEFTRSQNATADEIYQVANKLATILSNNIDVADLTTRDKKDYFLANSKNLEKIAN SLSEKEKKDKHGNDLSGSQIYDVELSKVKDSDLNFTAEQTFAAKLFKEMNSTTTFNTTKIATGSITAEQQATIAEQEGDL PGITIGTSWDRSYAQNSLTPLMGTITSQKSGIPAEDLDAYLKKGYQRNDRVGTGLLEKGYESELQGTHSISKVKFDKNGD VSGTKTIQKGKRGDDLKLTINLDFQNGVNNIVKTQLDQLIAQGYGQYNRGAYAVVLNVKTGAVLALSGYQRDPNTGTITE NTLGTFQSVFTPGSVVQMGTLTAAWNAGVISGNDTLTAQSIQFKDSNPINDWWGDASPMALTAVEALQYSSNTYMMQLAM RMLGAPYTAANQFLDDTNRVKVYEQFRKAFASYGLGASTGFDIPGESTGYLPSAKSEAASGVNVLYESFGQYDNYTPLQL AVYAATLGNNGTRLSPHIVQGIYEGGTDGQPGTLIKNITPKIMDKVNITPDNMDVLHQGMYAVVHGAGGLTTGRSMDSSK VSISGKTGTSESTKVLADGSQVIVTANNAVAFAPSDNPEIAIAVVLPDNTESNASSGTKANQSIVTGITDLYYSNEAFRK N
Sequences:
>Translated_721_residues MSDNKRKNDKRKQSDKSKKSHKEVKILKDPTKLIPKRVNLLFFVIFVLFMILIGKLFNMQVLNSHFYAEKSISAGGDVQI IEGAPRGNIYDATGKALASTVAVQAVEFTRSQNATADEIYQVANKLATILSNNIDVADLTTRDKKDYFLANSKNLEKIAN SLSEKEKKDKHGNDLSGSQIYDVELSKVKDSDLNFTAEQTFAAKLFKEMNSTTTFNTTKIATGSITAEQQATIAEQEGDL PGITIGTSWDRSYAQNSLTPLMGTITSQKSGIPAEDLDAYLKKGYQRNDRVGTGLLEKGYESELQGTHSISKVKFDKNGD VSGTKTIQKGKRGDDLKLTINLDFQNGVNNIVKTQLDQLIAQGYGQYNRGAYAVVLNVKTGAVLALSGYQRDPNTGTITE NTLGTFQSVFTPGSVVQMGTLTAAWNAGVISGNDTLTAQSIQFKDSNPINDWWGDASPMALTAVEALQYSSNTYMMQLAM RMLGAPYTAANQFLDDTNRVKVYEQFRKAFASYGLGASTGFDIPGESTGYLPSAKSEAASGVNVLYESFGQYDNYTPLQL AVYAATLGNNGTRLSPHIVQGIYEGGTDGQPGTLIKNITPKIMDKVNITPDNMDVLHQGMYAVVHGAGGLTTGRSMDSSK VSISGKTGTSESTKVLADGSQVIVTANNAVAFAPSDNPEIAIAVVLPDNTESNASSGTKANQSIVTGITDLYYSNEAFRK N >Mature_720_residues SDNKRKNDKRKQSDKSKKSHKEVKILKDPTKLIPKRVNLLFFVIFVLFMILIGKLFNMQVLNSHFYAEKSISAGGDVQII EGAPRGNIYDATGKALASTVAVQAVEFTRSQNATADEIYQVANKLATILSNNIDVADLTTRDKKDYFLANSKNLEKIANS LSEKEKKDKHGNDLSGSQIYDVELSKVKDSDLNFTAEQTFAAKLFKEMNSTTTFNTTKIATGSITAEQQATIAEQEGDLP GITIGTSWDRSYAQNSLTPLMGTITSQKSGIPAEDLDAYLKKGYQRNDRVGTGLLEKGYESELQGTHSISKVKFDKNGDV SGTKTIQKGKRGDDLKLTINLDFQNGVNNIVKTQLDQLIAQGYGQYNRGAYAVVLNVKTGAVLALSGYQRDPNTGTITEN TLGTFQSVFTPGSVVQMGTLTAAWNAGVISGNDTLTAQSIQFKDSNPINDWWGDASPMALTAVEALQYSSNTYMMQLAMR MLGAPYTAANQFLDDTNRVKVYEQFRKAFASYGLGASTGFDIPGESTGYLPSAKSEAASGVNVLYESFGQYDNYTPLQLA VYAATLGNNGTRLSPHIVQGIYEGGTDGQPGTLIKNITPKIMDKVNITPDNMDVLHQGMYAVVHGAGGLTTGRSMDSSKV SISGKTGTSESTKVLADGSQVIVTANNAVAFAPSDNPEIAIAVVLPDNTESNASSGTKANQSIVTGITDLYYSNEAFRKN
Specific function: Cell Wall Formation; Pbp-2 Is Responsible For The Determination Of The Rod Shape Of The Cell. Its Synthesize Cross- Linked Peptidoglycan From The Lipid Intermediates. [C]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786854, Length=543, Percent_Identity=23.9410681399632, Blast_Score=92, Evalue=2e-19, Organism=Escherichia coli, GI1786272, Length=425, Percent_Identity=27.7647058823529, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 77900; Mature: 77769
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDNKRKNDKRKQSDKSKKSHKEVKILKDPTKLIPKRVNLLFFVIFVLFMILIGKLFNMQ CCCCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLNSHFYAEKSISAGGDVQIIEGAPRGNIYDATGKALASTVAVQAVEFTRSQNATADEIY HHHHHHHHHCCCCCCCCEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHH QVANKLATILSNNIDVADLTTRDKKDYFLANSKNLEKIANSLSEKEKKDKHGNDLSGSQI HHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEE YDVELSKVKDSDLNFTAEQTFAAKLFKEMNSTTTFNTTKIATGSITAEQQATIAEQEGDL EEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEEEECCCCCHHHHHHHHHCCCC PGITIGTSWDRSYAQNSLTPLMGTITSQKSGIPAEDLDAYLKKGYQRNDRVGTGLLEKGY CCEEECCCCCHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCC ESELQGTHSISKVKFDKNGDVSGTKTIQKGKRGDDLKLTINLDFQNGVNNIVKTQLDQLI HHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEEEEEEEHHHCHHHHHHHHHHHHH AQGYGQYNRGAYAVVLNVKTGAVLALSGYQRDPNTGTITENTLGTFQSVFTPGSVVQMGT HHCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEECCHHHHHHHHCCCCCEEEECC LTAAWNAGVISGNDTLTAQSIQFKDSNPINDWWGDASPMALTAVEALQYSSNTYMMQLAM EEEECCCCEECCCCCEEEEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH RMLGAPYTAANQFLDDTNRVKVYEQFRKAFASYGLGASTGFDIPGESTGYLPSAKSEAAS HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH GVNVLYESFGQYDNYTPLQLAVYAATLGNNGTRLSPHIVQGIYEGGTDGQPGTLIKNITP HHHHHHHHHCCCCCCCHHEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCH KIMDKVNITPDNMDVLHQGMYAVVHGAGGLTTGRSMDSSKVSISGKTGTSESTKVLADGS HHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCC QVIVTANNAVAFAPSDNPEIAIAVVLPDNTESNASSGTKANQSIVTGITDLYYSNEAFRK EEEEEECCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCC N C >Mature Secondary Structure SDNKRKNDKRKQSDKSKKSHKEVKILKDPTKLIPKRVNLLFFVIFVLFMILIGKLFNMQ CCCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLNSHFYAEKSISAGGDVQIIEGAPRGNIYDATGKALASTVAVQAVEFTRSQNATADEIY HHHHHHHHHCCCCCCCCEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHH QVANKLATILSNNIDVADLTTRDKKDYFLANSKNLEKIANSLSEKEKKDKHGNDLSGSQI HHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEE YDVELSKVKDSDLNFTAEQTFAAKLFKEMNSTTTFNTTKIATGSITAEQQATIAEQEGDL EEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEEEECCCCCHHHHHHHHHCCCC PGITIGTSWDRSYAQNSLTPLMGTITSQKSGIPAEDLDAYLKKGYQRNDRVGTGLLEKGY CCEEECCCCCHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCC ESELQGTHSISKVKFDKNGDVSGTKTIQKGKRGDDLKLTINLDFQNGVNNIVKTQLDQLI HHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEEEEEEEHHHCHHHHHHHHHHHHH AQGYGQYNRGAYAVVLNVKTGAVLALSGYQRDPNTGTITENTLGTFQSVFTPGSVVQMGT HHCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEECCHHHHHHHHCCCCCEEEECC LTAAWNAGVISGNDTLTAQSIQFKDSNPINDWWGDASPMALTAVEALQYSSNTYMMQLAM EEEECCCCEECCCCCEEEEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH RMLGAPYTAANQFLDDTNRVKVYEQFRKAFASYGLGASTGFDIPGESTGYLPSAKSEAAS HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH GVNVLYESFGQYDNYTPLQLAVYAATLGNNGTRLSPHIVQGIYEGGTDGQPGTLIKNITP HHHHHHHHHCCCCCCCHHEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCH KIMDKVNITPDNMDVLHQGMYAVVHGAGGLTTGRSMDSSKVSISGKTGTSESTKVLADGS HHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCC QVIVTANNAVAFAPSDNPEIAIAVVLPDNTESNASSGTKANQSIVTGITDLYYSNEAFRK EEEEEECCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCC N C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11463916; 2654541 [H]