Click here to switch to the map view.

The map label for this gene is pepDA

Identifier: 15672234

GI number: 15672234

Start: 248411

End: 249790

Strand: Reverse

Name: pepDA

Synonym: L48417

Alternate gene names: 15672234

Gene position: 249790-248411 (Counterclockwise)

Preceding gene: 15672240

Following gene: 30023983

Centisome position: 10.56

GC content: 38.77

Gene sequence:

>1380_bases
ATGACCTGTACAACATTTCTCGTCGGTAAAAAAGCCTCATTAGATGGCACAACTTTAATTGCACGAAACGAAGATGGTGG
GGATAAACCTAATCCTCAACGTTTTGTTGTCATCAATCCTGAAAATCAACCCAAGCACTATCGCTCTATCACCACAGCTT
GTGAATTTGACTTACCAGAAAATCCCCTATCATATACTTCTACACCTGATGCGGATTCAAGCTATGGTATTTGGGCAGCG
GCTGGAATTAATAGTGAGAATGTTGCCATGACTGCGACAGAAACCTCAACAACAAATAGTCGTATTTTGGGATTGGACCC
TTATGTTGAAACAGGACTAGGTGAAGAAGACTTCACAACAATTACCCTCCCTTATATCCAGAGTGCGCGTGAGGGTGTTG
AACGAATGGGGCAACTCTTAGAAGAATATGGAACTTATGAATCAAACGGGATGGCTTTTTCTGATAAAGATGAAATTTGG
TGGTTAGAAACACTAGGTGGACATCAATGGGCAGCTATTCGTATCCCCGACGACGCTTATGTTATTGCTCCTAATCGTCT
TAATATTGATTGGTATGATTTTGAAAGTTCTGACACAATTTATTCAACTGGTTTGAAAGAATTTATTGATAAGAACAAGC
TTAATCCAGACTTTGATGGTTATAACCTTCGTCATATTTTTGGTTCAAGTACCATTAAAGACACGCGCTACAACAATCCA
CGCGCTTGGTATGTGCAAAACTATTTTTCTCCAGAAACCACAGGAAATGACGATCCATTTAACCAAGATTTACCTTTCAT
CTGCCATGCAAATCGCAAAATTTCCATTGAAGAAATTAAGTTTGTCATGTCAAGTCATTATGAAAATACAGCTTATGACC
CATACAGCACAACATCAAGCGCCGCAGAACAAAAATTGATTCGACCAATTGGACTCAATCGTAATTTGGAACTTCATGTT
TTACAAATTCGAGATAATATAGACAAGAAACTTGCTGGCATTCATTGGCTTGCTTTTGGACCTAACAGTTTCAATAGCCT
TGTTCCATTTTATGCTAGAGTAAGTGATACCCCCACTTGTTATCGCGATACAAAAGCCGACTTTGACCCAACCAAAATGT
ATTGGTTGACTACAATGACCGCTGTTCTAGGAGACAGTAATTTCCAAGGCTATGTCGATAAAAGAGACAATTTTGACCTA
AACACAATGGCAAAATTAAGAGCCTTACAAAACGAAACCGACAAAGTAAGCGACCAATCACTTGAAGCAGTGAACGAAAA
ACTTGCACAGATTGCTCTGACTGCTCAAACTGAACTTCTTGGTAAAATGGTTATTTCTGGTTCCAATCACATGAAACTTC
GCTTTGATTTTAATGATTAA

Upstream 100 bases:

>100_bases
ATAAAGCTATATAAAAATAGCATTTTGTAGTATAATGATAAGAACTTTAAGCTTTGAGGAACTTAGCACAAATCACTTAT
ATCTTTATAAAGGAGTTCAT

Downstream 100 bases:

>100_bases
AAAAATACGGATGGATTATCCGTATTTTTTAGATACTATCAATGGAGCGTCAACATCCATTGATAGAGTAGTCCAGCAAT
TACAGCACCAACAATTGAAC

Product: dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MTCTTFLVGKKASLDGTTLIARNEDGGDKPNPQRFVVINPENQPKHYRSITTACEFDLPENPLSYTSTPDADSSYGIWAA
AGINSENVAMTATETSTTNSRILGLDPYVETGLGEEDFTTITLPYIQSAREGVERMGQLLEEYGTYESNGMAFSDKDEIW
WLETLGGHQWAAIRIPDDAYVIAPNRLNIDWYDFESSDTIYSTGLKEFIDKNKLNPDFDGYNLRHIFGSSTIKDTRYNNP
RAWYVQNYFSPETTGNDDPFNQDLPFICHANRKISIEEIKFVMSSHYENTAYDPYSTTSSAAEQKLIRPIGLNRNLELHV
LQIRDNIDKKLAGIHWLAFGPNSFNSLVPFYARVSDTPTCYRDTKADFDPTKMYWLTTMTAVLGDSNFQGYVDKRDNFDL
NTMAKLRALQNETDKVSDQSLEAVNEKLAQIALTAQTELLGKMVISGSNHMKLRFDFND

Sequences:

>Translated_459_residues
MTCTTFLVGKKASLDGTTLIARNEDGGDKPNPQRFVVINPENQPKHYRSITTACEFDLPENPLSYTSTPDADSSYGIWAA
AGINSENVAMTATETSTTNSRILGLDPYVETGLGEEDFTTITLPYIQSAREGVERMGQLLEEYGTYESNGMAFSDKDEIW
WLETLGGHQWAAIRIPDDAYVIAPNRLNIDWYDFESSDTIYSTGLKEFIDKNKLNPDFDGYNLRHIFGSSTIKDTRYNNP
RAWYVQNYFSPETTGNDDPFNQDLPFICHANRKISIEEIKFVMSSHYENTAYDPYSTTSSAAEQKLIRPIGLNRNLELHV
LQIRDNIDKKLAGIHWLAFGPNSFNSLVPFYARVSDTPTCYRDTKADFDPTKMYWLTTMTAVLGDSNFQGYVDKRDNFDL
NTMAKLRALQNETDKVSDQSLEAVNEKLAQIALTAQTELLGKMVISGSNHMKLRFDFND
>Mature_458_residues
TCTTFLVGKKASLDGTTLIARNEDGGDKPNPQRFVVINPENQPKHYRSITTACEFDLPENPLSYTSTPDADSSYGIWAAA
GINSENVAMTATETSTTNSRILGLDPYVETGLGEEDFTTITLPYIQSAREGVERMGQLLEEYGTYESNGMAFSDKDEIWW
LETLGGHQWAAIRIPDDAYVIAPNRLNIDWYDFESSDTIYSTGLKEFIDKNKLNPDFDGYNLRHIFGSSTIKDTRYNNPR
AWYVQNYFSPETTGNDDPFNQDLPFICHANRKISIEEIKFVMSSHYENTAYDPYSTTSSAAEQKLIRPIGLNRNLELHVL
QIRDNIDKKLAGIHWLAFGPNSFNSLVPFYARVSDTPTCYRDTKADFDPTKMYWLTTMTAVLGDSNFQGYVDKRDNFDLN
TMAKLRALQNETDKVSDQSLEAVNEKLAQIALTAQTELLGKMVISGSNHMKLRFDFND

Specific function: Unknown

COG id: COG4690

COG function: function code E; Dipeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C69 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PEPDA_LACLA (Q9CIV4)

Other databases:

- EMBL:   AE005176
- PIR:   D86656
- RefSeq:   NP_266408.1
- MEROPS:   C69.001
- GeneID:   1113862
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L48417
- NMPDR:   fig|272623.1.peg.260
- HOGENOM:   HBG350888
- OMA:   NLELHVL
- ProtClustDB:   CLSK2300412
- BioCyc:   LLAC272623:L48417-MONOMER
- GO:   GO:0006508
- InterPro:   IPR005322

Pfam domain/function: PF03577 Peptidase_C69

EC number: NA

Molecular weight: Translated: 51918; Mature: 51787

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: ACT_SITE 3-3

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCTTFLVGKKASLDGTTLIARNEDGGDKPNPQRFVVINPENQPKHYRSITTACEFDLPE
CCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHEEECCCCC
NPLSYTSTPDADSSYGIWAAAGINSENVAMTATETSTTNSRILGLDPYVETGLGEEDFTT
CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCHHHHCCCCCCCEE
ITLPYIQSAREGVERMGQLLEEYGTYESNGMAFSDKDEIWWLETLGGHQWAAIRIPDDAY
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCCEEEEEEECCCCE
VIAPNRLNIDWYDFESSDTIYSTGLKEFIDKNKLNPDFDGYNLRHIFGSSTIKDTRYNNP
EECCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
RAWYVQNYFSPETTGNDDPFNQDLPFICHANRKISIEEIKFVMSSHYENTAYDPYSTTSS
CEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEECHHHHHHHHHCCCCCCCCCCCCCCHH
AAEQKLIRPIGLNRNLELHVLQIRDNIDKKLAGIHWLAFGPNSFNSLVPFYARVSDTPTC
HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCEEEEEECCCCCCCCCCCEEECCCCCCE
YRDTKADFDPTKMYWLTTMTAVLGDSNFQGYVDKRDNFDLNTMAKLRALQNETDKVSDQS
ECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCHHHCCHHH
LEAVNEKLAQIALTAQTELLGKMVISGSNHMKLRFDFND
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
>Mature Secondary Structure 
TCTTFLVGKKASLDGTTLIARNEDGGDKPNPQRFVVINPENQPKHYRSITTACEFDLPE
CEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHEEECCCCC
NPLSYTSTPDADSSYGIWAAAGINSENVAMTATETSTTNSRILGLDPYVETGLGEEDFTT
CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCHHHHCCCCCCCEE
ITLPYIQSAREGVERMGQLLEEYGTYESNGMAFSDKDEIWWLETLGGHQWAAIRIPDDAY
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCCEEEEEEECCCCE
VIAPNRLNIDWYDFESSDTIYSTGLKEFIDKNKLNPDFDGYNLRHIFGSSTIKDTRYNNP
EECCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
RAWYVQNYFSPETTGNDDPFNQDLPFICHANRKISIEEIKFVMSSHYENTAYDPYSTTSS
CEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEECHHHHHHHHHCCCCCCCCCCCCCCHH
AAEQKLIRPIGLNRNLELHVLQIRDNIDKKLAGIHWLAFGPNSFNSLVPFYARVSDTPTC
HHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCEEEEEECCCCCCCCCCCEEECCCCCCE
YRDTKADFDPTKMYWLTTMTAVLGDSNFQGYVDKRDNFDLNTMAKLRALQNETDKVSDQS
ECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCHHHCCHHH
LEAVNEKLAQIALTAQTELLGKMVISGSNHMKLRFDFND
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11337471