Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is rraA [C]
Identifier: 15668825
GI number: 15668825
Start: 573514
End: 574140
Strand: Direct
Name: rraA [C]
Synonym: MJ0644
Alternate gene names: 15668825
Gene position: 573514-574140 (Clockwise)
Preceding gene: 15668824
Following gene: 15668826
Centisome position: 34.45
GC content: 33.49
Gene sequence:
>627_bases GTGAAAGTCCTATTAAAAATTATTGTAGGGAGGGCTATGAATATCTTAAAAAATTTTTCAGTTCCCAATTTATGTGATGC TGGAGCTAAGCCTTTAAATGGCATTAAACCAATTTTAGAGAATCAAAAGCTTGTTTTTGGTGAGGCTATAACTGTAAAGA TAAGCTATAACGATTGGGGAACTTTAATTAAGACAATAAGCTTTGCCAAAAATAAATTTATCGTTGCTGAGGTTGTTGGC GAAGGAAAATATGAGACAGCAGTATGGGGAGGCTTAGCCTCTCTAAATGCCAAAATTAAGGGAGTTAGAGGAGTTGTTAT AGATGGATGTGTTAGGGATGTTGAAGATATAAAAGCTTTAAAGTTCCCAGTTTTTGCAAAAAATTTCTGCCCTAATGCAG GGAAACCTTTAAATCTTGGAGAGATAAATGTAGCAGTGAATTGTTGTGGTGTGATAGTTGAACCAGGAGATATTATTGTG GGAGACTGCAATGGAGTGGTAGTTATAAAAAAAGAATCTCTTCCAGAGATTATTGAAAATGCTAAAAATATAAAAGAGAA AGAAAGAAAAATTAGGGAAAGAATTCTAAGAGGGCAGGATTTAAGAGATGTTTTAAATTTAGAATAA
Upstream 100 bases:
>100_bases GGCTAAGGAGGTTGCTGAAATAGGACTTTCACAGGAATAAAATTTATAAAGGAAATTGATGCCTTTAGGCATCTAAGTAC CTTATTAAAACCTACAAACT
Downstream 100 bases:
>100_bases ATTAGAATAAATAAAAATTAGGGTGATAAGTGTTGAGAATTCCACGTAGTCTGAAATCTATTATAAACACAATAAATGGA GAATCTGGGACGAGATACAT
Product: S-adenosylmethionine:2-demethylmenaquinone methyltransferase MenG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MKVLLKIIVGRAMNILKNFSVPNLCDAGAKPLNGIKPILENQKLVFGEAITVKISYNDWGTLIKTISFAKNKFIVAEVVG EGKYETAVWGGLASLNAKIKGVRGVVIDGCVRDVEDIKALKFPVFAKNFCPNAGKPLNLGEINVAVNCCGVIVEPGDIIV GDCNGVVVIKKESLPEIIENAKNIKEKERKIRERILRGQDLRDVLNLE
Sequences:
>Translated_208_residues MKVLLKIIVGRAMNILKNFSVPNLCDAGAKPLNGIKPILENQKLVFGEAITVKISYNDWGTLIKTISFAKNKFIVAEVVG EGKYETAVWGGLASLNAKIKGVRGVVIDGCVRDVEDIKALKFPVFAKNFCPNAGKPLNLGEINVAVNCCGVIVEPGDIIV GDCNGVVVIKKESLPEIIENAKNIKEKERKIRERILRGQDLRDVLNLE >Mature_208_residues MKVLLKIIVGRAMNILKNFSVPNLCDAGAKPLNGIKPILENQKLVFGEAITVKISYNDWGTLIKTISFAKNKFIVAEVVG EGKYETAVWGGLASLNAKIKGVRGVVIDGCVRDVEDIKALKFPVFAKNFCPNAGKPLNLGEINVAVNCCGVIVEPGDIIV GDCNGVVVIKKESLPEIIENAKNIKEKERKIRERILRGQDLRDVLNLE
Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]
COG id: COG0684
COG function: function code H; Demethylmenaquinone methyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y644_METJA (Q58060)
Other databases:
- EMBL: L77117 - PIR: D64380 - RefSeq: NP_247628.1 - ProteinModelPortal: Q58060 - SMR: Q58060 - GeneID: 1451510 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0644 - NMPDR: fig|243232.1.peg.665 - TIGR: MJ0644 - HOGENOM: HBG539095 - OMA: VGDCNGV - ProtClustDB: CLSK796504 - BioCyc: MJAN243232:MJ_0644-MONOMER - InterPro: IPR005493 - Gene3D: G3DSA:3.50.30.40
Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase
EC number: NA
Molecular weight: Translated: 22709; Mature: 22709
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLLKIIVGRAMNILKNFSVPNLCDAGAKPLNGIKPILENQKLVFGEAITVKISYNDWG CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEEEEEEECCHH TLIKTISFAKNKFIVAEVVGEGKYETAVWGGLASLNAKIKGVRGVVIDGCVRDVEDIKAL HHHHHHHHHCCCEEEEEEECCCCCCHHHHCCHHHCCCEECCCCEEEEHHHHHHHHHHHHH KFPVFAKNFCPNAGKPLNLGEINVAVNCCGVIVEPGDIIVGDCNGVVVIKKESLPEIIEN HCCHHHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEECCCCEEEEECCCCHHHHHH AKNIKEKERKIRERILRGQDLRDVLNLE HHHHHHHHHHHHHHHHCCCCHHHHHCCC >Mature Secondary Structure MKVLLKIIVGRAMNILKNFSVPNLCDAGAKPLNGIKPILENQKLVFGEAITVKISYNDWG CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEEEEEEECCHH TLIKTISFAKNKFIVAEVVGEGKYETAVWGGLASLNAKIKGVRGVVIDGCVRDVEDIKAL HHHHHHHHHCCCEEEEEEECCCCCCHHHHCCHHHCCCEECCCCEEEEHHHHHHHHHHHHH KFPVFAKNFCPNAGKPLNLGEINVAVNCCGVIVEPGDIIVGDCNGVVVIKKESLPEIIEN HCCHHHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEECCCCEEEEECCCCHHHHHH AKNIKEKERKIRERILRGQDLRDVLNLE HHHHHHHHHHHHHHHHCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087