Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
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Accession | NC_000909 |
Length | 1,664,970 |
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The map label for this gene is lpdA [C]
Identifier: 15668817
GI number: 15668817
Start: 565878
End: 567071
Strand: Direct
Name: lpdA [C]
Synonym: MJ0636
Alternate gene names: 15668817
Gene position: 565878-567071 (Clockwise)
Preceding gene: 15668816
Following gene: 15668823
Centisome position: 33.99
GC content: 30.82
Gene sequence:
>1194_bases TTGTTATTTGGTGAAAGTATGACATTAAAGATAGCTGTTGTTGGAGCAGGTCCTGCAGGAAGAACATCGGCTATGTTTTT GGCAAAAAATGGCTTTGATGTTGATTTATTTGAAAAAGATAGAGTTGGAGGAACTTGTTTAAACTATGGATGCACATATA TAACTGGATTAAGAGAAATGGCAGATATTATTAATAATTTAAGTATTTTAAAAGGAGAGAAGGTTCATTTAGAGGAAATA ATTTCATTTAAAGAGTTGCAGGAAAAAATAAATAAAATTCAGGATAGAATTAGGAATAAATTAGAAAAAGAAACAAAAGA ACTTGGAGTAAATATAAAATACAAAGAGTTTAAGAATAAGCATAAGAACGATTATGATTACATCATCTATGCAACTGGAA GAAATTATCCTTCCAATTATAATGGATATGAGGTTTTAACTCACAAAGATATACCAAATTTAAGAGAACTGCCAGAAAAT ATCTTAATTATTGGTGGAGGAGTTGTAGCTACCGAATATGCTTCAATATTTTCTGACTTTGGCTGTAATGTTGTTCTATA CACAAGGTCTAAGATTTTGAAAGAGATTAAGGATGAGGAAATTAGAGATTACTTAATGAAGAAAGTTATAAACTTTAAAA TAATCAATGACAAAGAAGAGCTTGAAAATCTGTTAAAGGATGAAAGTTATACAAAAATCTTAGCCATTGGTGGAAATGGC AGATTTAAGACAGATGATTACTTGAGGGTTTTAAATGAAGAGAAAGTTTATGCATGTGGAGATTGTTTAATCAACGGTGG AGGAAATACTCCAATATCAAGGATGGAGGGGAGAGTGGTAGCCCAAAATATCTACAATGAAATAAACAATAAGCCTCTAA TAAAACCAAATTATGAATTAATTCCAAAGACTATAAGGCTGTCTTTAACTATATCTTATGTAGGGAAGCAGACAAATAAT TATAAAACAATAAGAAGCTGTGTAGGGAAGGGGAATTTCTTTAAAGTTTTGAGTGGTGTTGGGATAAATAAAATCTATTA TGAAGATGGAAAAATTGTTGGAGCTATAACCATGATGCCTTGTGCTGAAATTCTTCCATACTTCACTCAGTTAATTAGGG GGATAGATGTTTATAACAACTTCATGGAAGTTCATCCATCAACTGACATATTTTATAAAGAGTTCAGGTCATAA
Upstream 100 bases:
>100_bases TATTGTTGTTGTTCTTATTTTTTATTTGATTAAAAAATTTAATTGTAATTGTTATTAACCATTAACTTTATATTCAATAA CATTAAACCAATTTTTAATT
Downstream 100 bases:
>100_bases AAACAAAGAACAAAAAAATAATTAATCAAAAACTGGGTATTTTCCTAAAAGATTGATAAATGTTGTATGCCTCTCCAAAG ATTTTAAAATTTCTTCTAAC
Product: dihydrolipoamide dehydrogenase
Products: protein N6-(lipoyl)lysine; NADH; H+
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MLFGESMTLKIAVVGAGPAGRTSAMFLAKNGFDVDLFEKDRVGGTCLNYGCTYITGLREMADIINNLSILKGEKVHLEEI ISFKELQEKINKIQDRIRNKLEKETKELGVNIKYKEFKNKHKNDYDYIIYATGRNYPSNYNGYEVLTHKDIPNLRELPEN ILIIGGGVVATEYASIFSDFGCNVVLYTRSKILKEIKDEEIRDYLMKKVINFKIINDKEELENLLKDESYTKILAIGGNG RFKTDDYLRVLNEEKVYACGDCLINGGGNTPISRMEGRVVAQNIYNEINNKPLIKPNYELIPKTIRLSLTISYVGKQTNN YKTIRSCVGKGNFFKVLSGVGINKIYYEDGKIVGAITMMPCAEILPYFTQLIRGIDVYNNFMEVHPSTDIFYKEFRS
Sequences:
>Translated_397_residues MLFGESMTLKIAVVGAGPAGRTSAMFLAKNGFDVDLFEKDRVGGTCLNYGCTYITGLREMADIINNLSILKGEKVHLEEI ISFKELQEKINKIQDRIRNKLEKETKELGVNIKYKEFKNKHKNDYDYIIYATGRNYPSNYNGYEVLTHKDIPNLRELPEN ILIIGGGVVATEYASIFSDFGCNVVLYTRSKILKEIKDEEIRDYLMKKVINFKIINDKEELENLLKDESYTKILAIGGNG RFKTDDYLRVLNEEKVYACGDCLINGGGNTPISRMEGRVVAQNIYNEINNKPLIKPNYELIPKTIRLSLTISYVGKQTNN YKTIRSCVGKGNFFKVLSGVGINKIYYEDGKIVGAITMMPCAEILPYFTQLIRGIDVYNNFMEVHPSTDIFYKEFRS >Mature_397_residues MLFGESMTLKIAVVGAGPAGRTSAMFLAKNGFDVDLFEKDRVGGTCLNYGCTYITGLREMADIINNLSILKGEKVHLEEI ISFKELQEKINKIQDRIRNKLEKETKELGVNIKYKEFKNKHKNDYDYIIYATGRNYPSNYNGYEVLTHKDIPNLRELPEN ILIIGGGVVATEYASIFSDFGCNVVLYTRSKILKEIKDEEIRDYLMKKVINFKIINDKEELENLLKDESYTKILAIGGNG RFKTDDYLRVLNEEKVYACGDCLINGGGNTPISRMEGRVVAQNIYNEINNKPLIKPNYELIPKTIRLSLTISYVGKQTNN YKTIRSCVGKGNFFKVLSGVGINKIYYEDGKIVGAITMMPCAEILPYFTQLIRGIDVYNNFMEVHPSTDIFYKEFRS
Specific function: Lipoamide Dehydrogenase Is A Component Of The Glycine Cleavage System As Well As Of The Alpha-Ketoacid Dehydrogenase Complexes. [C]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1880 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal
Swissprot (AC and ID): Y636_METJA (Q58053)
Other databases:
- EMBL: L77117 - PIR: D64379 - RefSeq: NP_247620.1 - ProteinModelPortal: Q58053 - GeneID: 1451502 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0636 - NMPDR: fig|243232.1.peg.657 - TIGR: MJ0636 - HOGENOM: HBG539714 - OMA: AEYASIF - ProtClustDB: CLSK876274 - BioCyc: MJAN243232:MJ_0636-MONOMER - InterPro: IPR013027 - InterPro: IPR001327
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2
EC number: 1.8.1.4
Molecular weight: Translated: 45233; Mature: 45233
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFGESMTLKIAVVGAGPAGRTSAMFLAKNGFDVDLFEKDRVGGTCLNYGCTYITGLREM CCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHCCHHHHHHHHHH ADIINNLSILKGEKVHLEEIISFKELQEKINKIQDRIRNKLEKETKELGVNIKYKEFKNK HHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHCC HKNDYDYIIYATGRNYPSNYNGYEVLTHKDIPNLRELPENILIIGGGVVATEYASIFSDF CCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCHHHCCCCEEEEECCHHHHHHHHHHHHC GCNVVLYTRSKILKEIKDEEIRDYLMKKVINFKIINDKEELENLLKDESYTKILAIGGNG CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHCCCCCEEEEEECCCC RFKTDDYLRVLNEEKVYACGDCLINGGGNTPISRMEGRVVAQNIYNEINNKPLIKPNYEL CCCCHHHHHHHCCCCEEEECCEEEECCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHH IPKTIRLSLTISYVGKQTNNYKTIRSCVGKGNFFKVLSGVGINKIYYEDGKIVGAITMMP CCCEEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHCCCCCEEEEECCEEEEEEECCC CAEILPYFTQLIRGIDVYNNFMEVHPSTDIFYKEFRS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC >Mature Secondary Structure MLFGESMTLKIAVVGAGPAGRTSAMFLAKNGFDVDLFEKDRVGGTCLNYGCTYITGLREM CCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHCCHHHHHHHHHH ADIINNLSILKGEKVHLEEIISFKELQEKINKIQDRIRNKLEKETKELGVNIKYKEFKNK HHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHCC HKNDYDYIIYATGRNYPSNYNGYEVLTHKDIPNLRELPENILIIGGGVVATEYASIFSDF CCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCHHHCCCCEEEEECCHHHHHHHHHHHHC GCNVVLYTRSKILKEIKDEEIRDYLMKKVINFKIINDKEELENLLKDESYTKILAIGGNG CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHCCCCCEEEEEECCCC RFKTDDYLRVLNEEKVYACGDCLINGGGNTPISRMEGRVVAQNIYNEINNKPLIKPNYEL CCCCHHHHHHHCCCCEEEECCEEEECCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHH IPKTIRLSLTISYVGKQTNNYKTIRSCVGKGNFFKVLSGVGINKIYYEDGKIVGAITMMP CCCEEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHCCCCCEEEEECCEEEEEEECCC CAEILPYFTQLIRGIDVYNNFMEVHPSTDIFYKEFRS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NADH [C]
Metal ions: NaCl [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.017 {lipoamide}} 1.1 {NAD+}} [C]
Substrates: protein N6-(dihydrolipoyl)lysine; NAD+
Specific reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+
General reaction: Redox reaction [C]
Inhibitor: Iodoacetic acid; p-Aminophenyl dichloroarsine [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087