Definition Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome.
Accession NC_000909
Length 1,664,970

Click here to switch to the map view.

The map label for this gene is spcS

Identifier: 15668790

GI number: 15668790

Start: 539089

End: 540393

Strand: Reverse

Name: spcS

Synonym: MJ0610

Alternate gene names: 15668790

Gene position: 540393-539089 (Counterclockwise)

Preceding gene: 15668794

Following gene: 15668789

Centisome position: 32.46

GC content: 33.33

Gene sequence:

>1305_bases
ATGGGACTTAATATAACTGGACTCATCCCTAAACACATGGAGAATAGGGGAAAACTAACTTTAAAAGAAAACTTAAAAAT
TATTGAAAATATTTTAGAGCAGAGAAAAGCTCCAGAGAATGGAATCGATGAAGAGCATATAAAGCTATTGTTGAGGCTCT
TATCTTTTATGGACACTGACAAAGACCCAAATGTTGTGCAGATTGGTGAGAGAGAGGCAAGGGTTTATACAAAACTTCAA
AGGGATGGTGTTTTTGATTTCTGCCATGGTGTTGGAAGGAGTGGGAATTTAATAGACCCTCAACCAAAAGCTCCAGGAGC
AAGTGTGATGTATAAGCTAACTAATAAATTATTAGAGAGTTTTTTAAAAGCTTTAGGGTTAAAGGTAAATGCGATAGCAA
CACCAGTAGCCACTGGGATGAGTTTAGCCCTCTGTTTATCAGCAGCAAGGAAAAAATATAACTCAAATGTTGTTATCTAT
CCCTATGCAGCCCATAAAAGTCCTATAAAGGCAACTTCATTTATTGGTATGAGGATGAGGTTGGTTGAGACTGTTTTAGA
TGGAGATATTGTTAAAGTTGAGGTTTCAGATATTGAAGATGCTATAAGAAAAGAAATTAATGAGAACAACAACCCAGTAG
TTTTAAGCACTTTAACTTTTTTCCCACCAAGAAAGAGTGATGATATTAAAGAGATAGCAAAGATATGCCAAGATTATGAC
ATCCCTCATATAATAAATGGTGCTTATGCTATCCAAAATTTTTACTATATCGAGAAGCTAAAAAAAGCTTTAAAGTATAG
AATTGATGCTGTAGTTAGCTCATCAGATAAAAATCTATTTACGCCAATTGGTGGAGGAATAATTTATACAAAGGATGAGA
GTTTTTTAAAAGAAATATCTCTTACTTATCCAGGAAGGGCATCAGCAAATCCAATTGTTAATATTTTAATATCTCTCTTG
GCAATTGGAACTAAAGACTATCTAAATTTAATGAAAGAACAAAAAGAGTGTAAAAAGCTATTGAATGAGTTATTGGAAGA
TTTAGCTAAGAAAAAAGGAGAGAAGGTTTTGAATGTAGAGAATCCAATTTCTTCATGTATAACAACAAAAAAAGACCCAT
TGGATGTTGCTGGTAAGCTTTACAATTTGAGAGTTACTGGGCCGAGAGGAGTTAGAAGGAATGACAAATTTGGAACTTGC
TATTTAAAAGAGTATCCTTATGACTATATAGTTGTAAATTCAGCTATTGGAGTTAAAAAAGAGGATATCTACAAAGTTAT
TGAGAAGTTGGATGAGGTTTTATAA

Upstream 100 bases:

>100_bases
TTTATAATTCGTTTATATTATTGTTTTATAACAAATATCACATTTATGTGACATTTTTAGATTATTTTAATAAGTTATTG
ACCTATAAAAAGGTGATTGA

Downstream 100 bases:

>100_bases
AAAGGGATAACATGGAGTTAAAAAATAAAAAGCTTAGTTTGTGGGAAGCTGTTTCTATGGCTGTTGGTGTAATGATTGGG
GCAAGTATATTTTCTATATT

Product: hypothetical protein

Products: NA

Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase; Sep-tRNA:Sec-tRNA synthase; SepSecS

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MGLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTDKDPNVVQIGEREARVYTKLQ
RDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLESFLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIY
PYAAHKSPIKATSFIGMRMRLVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD
IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEISLTYPGRASANPIVNILISLL
AIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVENPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTC
YLKEYPYDYIVVNSAIGVKKEDIYKVIEKLDEVL

Sequences:

>Translated_434_residues
MGLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTDKDPNVVQIGEREARVYTKLQ
RDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLESFLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIY
PYAAHKSPIKATSFIGMRMRLVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD
IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEISLTYPGRASANPIVNILISLL
AIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVENPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTC
YLKEYPYDYIVVNSAIGVKKEDIYKVIEKLDEVL
>Mature_433_residues
GLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTDKDPNVVQIGEREARVYTKLQR
DGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLESFLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIYP
YAAHKSPIKATSFIGMRMRLVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYDI
PHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEISLTYPGRASANPIVNILISLLA
IGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVENPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTCY
LKEYPYDYIVVNSAIGVKKEDIYKVIEKLDEVL

Specific function: Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis

COG id: COG0076

COG function: function code E; Glutamate decarboxylase and related PLP-dependent proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SepSecS family

Homologues:

Organism=Homo sapiens, GI267844904, Length=429, Percent_Identity=35.6643356643357, Blast_Score=257, Evalue=2e-68,
Organism=Caenorhabditis elegans, GI212646307, Length=435, Percent_Identity=30.8045977011494, Blast_Score=205, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17559116, Length=435, Percent_Identity=30.8045977011494, Blast_Score=205, Evalue=3e-53,
Organism=Drosophila melanogaster, GI221377925, Length=443, Percent_Identity=31.1512415349887, Blast_Score=223, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SPCS_METJA (Q58027)

Other databases:

- EMBL:   L77117
- PIR:   B64376
- RefSeq:   NP_247592.1
- ProteinModelPortal:   Q58027
- SMR:   Q58027
- GeneID:   1451475
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0610
- NMPDR:   fig|243232.1.peg.629
- TIGR:   MJ0610
- HOGENOM:   HBG716333
- OMA:   HKSPIKA
- ProtClustDB:   CLSK876261
- BioCyc:   MJAN243232:MJ_0610-MONOMER
- GO:   GO:0006412
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR019872
- InterPro:   IPR008829
- Gene3D:   G3DSA:3.40.640.10
- PANTHER:   PTHR12944
- TIGRFAMs:   TIGR03531

Pfam domain/function: PF05889 SLA_LP_auto_ag; SSF53383 PyrdxlP-dep_Trfase_major

EC number: =2.9.1.2

Molecular weight: Translated: 48684; Mature: 48553

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTD
CCCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
KDPNVVQIGEREARVYTKLQRDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLES
CCCCEEEECCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
FLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIYPYAAHKSPIKATSFIGMRMR
HHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH
LVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD
HHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCC
IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEIS
CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEECCHHHHHHHC
LTYPGRASANPIVNILISLLAIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVE
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
NPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTCYLKEYPYDYIVVNSAIGVKK
CHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCH
EDIYKVIEKLDEVL
HHHHHHHHHHHHCC
>Mature Secondary Structure 
GLNITGLIPKHMENRGKLTLKENLKIIENILEQRKAPENGIDEEHIKLLLRLLSFMDTD
CCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC
KDPNVVQIGEREARVYTKLQRDGVFDFCHGVGRSGNLIDPQPKAPGASVMYKLTNKLLES
CCCCEEEECCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
FLKALGLKVNAIATPVATGMSLALCLSAARKKYNSNVVIYPYAAHKSPIKATSFIGMRMR
HHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH
LVETVLDGDIVKVEVSDIEDAIRKEINENNNPVVLSTLTFFPPRKSDDIKEIAKICQDYD
HHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCC
IPHIINGAYAIQNFYYIEKLKKALKYRIDAVVSSSDKNLFTPIGGGIIYTKDESFLKEIS
CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEECCHHHHHHHC
LTYPGRASANPIVNILISLLAIGTKDYLNLMKEQKECKKLLNELLEDLAKKKGEKVLNVE
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
NPISSCITTKKDPLDVAGKLYNLRVTGPRGVRRNDKFGTCYLKEYPYDYIVVNSAIGVKK
CHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCH
EDIYKVIEKLDEVL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087