Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 15602127

GI number: 15602127

Start: 295133

End: 295900

Strand: Reverse

Name: potC [H]

Synonym: PM0262

Alternate gene names: 15602127

Gene position: 295900-295133 (Counterclockwise)

Preceding gene: 15602128

Following gene: 15602126

Centisome position: 13.11

GC content: 41.02

Gene sequence:

>768_bases
ATGGGCCGTTTACTACGCAATATTTTTATGTTTGTGGTCTATGCTTACTTGTATATTCCAATTGCAATCTTAGTCACAAA
CTCGTTTAACGATGATCGTTATGGCTTAACCTGGAAAGGCTTTAGTTGGAAATGGTATGAGCGTTTGTTTAGCAACGATA
CCTTAATTCAAGCAGCCATTCACTCTATTACCATTGCTTTCTTTGCAGCGACAGCAGCAACGATTATTGGTGGACTGACC
GCGATTGCGCTTTACCGCTATCGTTTCCGTGGTAAACAAGCAGTTAGTGGGATGTTATTTATCGTCATGATGTCTCCAGA
TATTGTCATGGCAGTCTCTTTACTGGCACTGTTTATGATTGTGGGAATTAACTTAGGTTTTTGGTCATTATTACTCGCCC
ATATTACCTTCTGTTTGCCTTACGTGGTCGTCACCATTTTCTCAAGATTAAAAGGGTTTGATGCCAAAATGCTAGAGGCT
GCCAAAGATCTGGGGGCGGGCGAGGTGACAATTTTACGTAAAATTATTTTCCCACTGGCGCTGCCGGCTATCGTTTCAGG
TTGGTTATTGAGCTTTACTATCTCACTGGATGATGTAGTGGTCTCCTCATTCGTGAGTGGCGTCAGCTATGAGATTTTAC
CATTGAAAATTTTCTCTTTGGTCAAAACAGGTGTCACCCCAGAAGTCAATGCATTGGCAACCATTATGATTATTCTTTCA
TTAGCTTTAGTCATTTTGAGCCAAGTGGTTGCAAGAAAAGACAAATAA

Upstream 100 bases:

>100_bases
GTTCTGCAATCAGCATTGGATTAACTATCCTGATGGCATTACTGATCTTTGTTTACTACAAAGCCAGCAAATTAATGAAT
AAGAAAATGGAGTTGGAATA

Downstream 100 bases:

>100_bases
ATGTTGTCTTAAAAAATAATACTTCACAAACAACCTAATACAAAATAGAATACGCCTTGCCTTAAAACAAGGCGTTTTTT
TATGCTTCTTCAAGAAGAAA

Product: spermidine/putrescine ABC transporter membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MGRLLRNIFMFVVYAYLYIPIAILVTNSFNDDRYGLTWKGFSWKWYERLFSNDTLIQAAIHSITIAFFAATAATIIGGLT
AIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMIVGINLGFWSLLLAHITFCLPYVVVTIFSRLKGFDAKMLEA
AKDLGAGEVTILRKIIFPLALPAIVSGWLLSFTISLDDVVVSSFVSGVSYEILPLKIFSLVKTGVTPEVNALATIMIILS
LALVILSQVVARKDK

Sequences:

>Translated_255_residues
MGRLLRNIFMFVVYAYLYIPIAILVTNSFNDDRYGLTWKGFSWKWYERLFSNDTLIQAAIHSITIAFFAATAATIIGGLT
AIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMIVGINLGFWSLLLAHITFCLPYVVVTIFSRLKGFDAKMLEA
AKDLGAGEVTILRKIIFPLALPAIVSGWLLSFTISLDDVVVSSFVSGVSYEILPLKIFSLVKTGVTPEVNALATIMIILS
LALVILSQVVARKDK
>Mature_254_residues
GRLLRNIFMFVVYAYLYIPIAILVTNSFNDDRYGLTWKGFSWKWYERLFSNDTLIQAAIHSITIAFFAATAATIIGGLTA
IALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMIVGINLGFWSLLLAHITFCLPYVVVTIFSRLKGFDAKMLEAA
KDLGAGEVTILRKIIFPLALPAIVSGWLLSFTISLDDVVVSSFVSGVSYEILPLKIFSLVKTGVTPEVNALATIMIILSL
ALVILSQVVARKDK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=255, Percent_Identity=71.7647058823529, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI1787081, Length=239, Percent_Identity=42.2594142259414, Blast_Score=160, Evalue=6e-41,
Organism=Escherichia coli, GI1787714, Length=228, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788764, Length=211, Percent_Identity=27.4881516587678, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28238; Mature: 28107

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLLRNIFMFVVYAYLYIPIAILVTNSFNDDRYGLTWKGFSWKWYERLFSNDTLIQAAI
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHCCCHHHHHHH
HSITIAFFAATAATIIGGLTAIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCHHHHHHHHHHHHHH
VGINLGFWSLLLAHITFCLPYVVVTIFSRLKGFDAKMLEAAKDLGAGEVTILRKIIFPLA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
LPAIVSGWLLSFTISLDDVVVSSFVSGVSYEILPLKIFSLVKTGVTPEVNALATIMIILS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LALVILSQVVARKDK
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
GRLLRNIFMFVVYAYLYIPIAILVTNSFNDDRYGLTWKGFSWKWYERLFSNDTLIQAAI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHCCCHHHHHHH
HSITIAFFAATAATIIGGLTAIALYRYRFRGKQAVSGMLFIVMMSPDIVMAVSLLALFMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCHHHHHHHHHHHHHH
VGINLGFWSLLLAHITFCLPYVVVTIFSRLKGFDAKMLEAAKDLGAGEVTILRKIIFPLA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
LPAIVSGWLLSFTISLDDVVVSSFVSGVSYEILPLKIFSLVKTGVTPEVNALATIMIILS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LALVILSQVVARKDK
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]