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The map label for this gene is rbsB_1 [H]

Identifier: 15602018

GI number: 15602018

Start: 180683

End: 181570

Strand: Reverse

Name: rbsB_1 [H]

Synonym: PM0153

Alternate gene names: 15602018

Gene position: 181570-180683 (Counterclockwise)

Preceding gene: 15602019

Following gene: 15602017

Centisome position: 8.04

GC content: 44.14

Gene sequence:

>888_bases
ATGAAAAAACTTCAAAAACTCACAACGTTAGCCTCAGCATTGATGTTAAGTTTGGCAGTCAGTGGCACTGCACTAGCTAA
AGAAACCATTGCTTTGGCTGTTTCAACGCTCGATAACCCTTTCTTTGTGACACTCAAAGACGGTGCACAGAAAAAAGCCG
ATGAACTGGGCTATAAATTGGTTGTTTTAGATTCACAAAACGATCCAGCAAAAGAATTAGCGAACGTAGAAGATTTAACT
GTTCGTGGAGTGAAAGTCCTTTTAATCAACCCGACTGATTCTGAAGCCGTGGTCAATGCTGTGAAAATGGCAAATCGCAA
TAAAATTCCGGTCATCACTTTAGACCGTGGTGCAGTTGCGGGAGACGTCGTCAGCCATATTGCGTCTGATAACGTTGCTG
GAGGAAAAATGGCGGGCGATTTTATCGCTGAAAAACTTGGCGCAGGGGCAAAGGTCATTCAACTTGAAGGCATCGCGGGC
ACCTCAGCAGCACGTGAACGCGGAGAAGGCTTTAAACAAGCGATTGACGCTCATAAATTTGATGTGCTTGCAAGCCAACC
CGCCGACTTTGACCGTACCAAAGGGCTTAACGTAATGGAAAACTTGTTAGCCAGCAAAGGGGATGTTAAAGCCGTCTTTG
CTCAAAATGACGAGATGGCATTAGGGGCATTACGTGCTATCAATGCAGCCAATAAAAAGGTGTTAGTCGTTGGCTTTGAC
GGTACCGATGATGGTGTAAAAGCAGTACAAACAGGTAAAATGGCCGCGACCATTGCTCAACAACCTGATTTAATTGGCGC
ATTAGGTGTGGTAACCGCAGATAAAGTCTTGAAAGGTGAAAAAGTGGAAGCCAAAATTCCTGTTGATTTAAAAGTGATCC
ATAAATAA

Upstream 100 bases:

>100_bases
AATGATTGCAAAAGCATTAGTTATCTTAGTCGCGGTTTTAGCGGATAACTATTTAGGCACCAAAAAAGTTTAACCCACTC
ACTCTGTAAGGAGAATGCAA

Downstream 100 bases:

>100_bases
GATCATCATCAAGCTTCGATGGGGGCAAGCTTAGGGCTTGCCCTATATCACCTCAACATGAAACACAAAATAGCGAAGAA
CATATGAAAAAATTAACGGT

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKKLQKLTTLASALMLSLAVSGTALAKETIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVLDSQNDPAKELANVEDLT
VRGVKVLLINPTDSEAVVNAVKMANRNKIPVITLDRGAVAGDVVSHIASDNVAGGKMAGDFIAEKLGAGAKVIQLEGIAG
TSAARERGEGFKQAIDAHKFDVLASQPADFDRTKGLNVMENLLASKGDVKAVFAQNDEMALGALRAINAANKKVLVVGFD
GTDDGVKAVQTGKMAATIAQQPDLIGALGVVTADKVLKGEKVEAKIPVDLKVIHK

Sequences:

>Translated_295_residues
MKKLQKLTTLASALMLSLAVSGTALAKETIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVLDSQNDPAKELANVEDLT
VRGVKVLLINPTDSEAVVNAVKMANRNKIPVITLDRGAVAGDVVSHIASDNVAGGKMAGDFIAEKLGAGAKVIQLEGIAG
TSAARERGEGFKQAIDAHKFDVLASQPADFDRTKGLNVMENLLASKGDVKAVFAQNDEMALGALRAINAANKKVLVVGFD
GTDDGVKAVQTGKMAATIAQQPDLIGALGVVTADKVLKGEKVEAKIPVDLKVIHK
>Mature_295_residues
MKKLQKLTTLASALMLSLAVSGTALAKETIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVLDSQNDPAKELANVEDLT
VRGVKVLLINPTDSEAVVNAVKMANRNKIPVITLDRGAVAGDVVSHIASDNVAGGKMAGDFIAEKLGAGAKVIQLEGIAG
TSAARERGEGFKQAIDAHKFDVLASQPADFDRTKGLNVMENLLASKGDVKAVFAQNDEMALGALRAINAANKKVLVVGFD
GTDDGVKAVQTGKMAATIAQQPDLIGALGVVTADKVLKGEKVEAKIPVDLKVIHK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=293, Percent_Identity=75.7679180887372, Blast_Score=432, Evalue=1e-122,
Organism=Escherichia coli, GI1790526, Length=299, Percent_Identity=35.1170568561873, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=30.4347826086957, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790194, Length=274, Percent_Identity=26.6423357664234, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789990, Length=243, Percent_Identity=28.3950617283951, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788473, Length=276, Percent_Identity=26.4492753623188, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787948, Length=302, Percent_Identity=24.1721854304636, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30789; Mature: 30789

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLQKLTTLASALMLSLAVSGTALAKETIALAVSTLDNPFFVTLKDGAQKKADELGYKL
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCCCEEEEECCCCHHHHHHCCEEE
VVLDSQNDPAKELANVEDLTVRGVKVLLINPTDSEAVVNAVKMANRNKIPVITLDRGAVA
EEEECCCCCHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCHH
GDVVSHIASDNVAGGKMAGDFIAEKLGAGAKVIQLEGIAGTSAARERGEGFKQAIDAHKF
HHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
DVLASQPADFDRTKGLNVMENLLASKGDVKAVFAQNDEMALGALRAINAANKKVLVVGFD
HEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEC
GTDDGVKAVQTGKMAATIAQQPDLIGALGVVTADKVLKGEKVEAKIPVDLKVIHK
CCCCCHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEECC
>Mature Secondary Structure
MKKLQKLTTLASALMLSLAVSGTALAKETIALAVSTLDNPFFVTLKDGAQKKADELGYKL
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCCCEEEEECCCCHHHHHHCCEEE
VVLDSQNDPAKELANVEDLTVRGVKVLLINPTDSEAVVNAVKMANRNKIPVITLDRGAVA
EEEECCCCCHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCHH
GDVVSHIASDNVAGGKMAGDFIAEKLGAGAKVIQLEGIAGTSAARERGEGFKQAIDAHKF
HHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
DVLASQPADFDRTKGLNVMENLLASKGDVKAVFAQNDEMALGALRAINAANKKVLVVGFD
HEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEC
GTDDGVKAVQTGKMAATIAQQPDLIGALGVVTADKVLKGEKVEAKIPVDLKVIHK
CCCCCHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]