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The map label for this gene is rbsC [H]

Identifier: 15602019

GI number: 15602019

Start: 181598

End: 182566

Strand: Reverse

Name: rbsC [H]

Synonym: PM0154

Alternate gene names: 15602019

Gene position: 182566-181598 (Counterclockwise)

Preceding gene: 15602020

Following gene: 15602018

Centisome position: 8.09

GC content: 43.65

Gene sequence:

>969_bases
ATGACAACTCAAGCAAAACCATTCCAATTCGGTAAATTCTTAATTGAACAACGTTCCATCATTGCCTTACTGGTGCTGAT
TGCGATCGTCTCAATGATCAATCCTGACTTTTTCAGTGTGGATAATATTCTCAATATTTTACGCCAAACTTCAGTCAACG
CAATTATTGCCGTCGGGATGACATTTGTGATCTTGATTGCCGGGATCGATCTTTCGGTCGGTTCGGTACTTGCATTAACG
GGGGCTATTGCCGCCTCGATGGTCAGTACTGAGTTACCAATACTGCTCGTCATTCCAGTCACACTCTTGATTGGTACATT
ACTGGGCGGGATCAGCGGTGTTATTGTCGCGAAAGGGAAAGTACAAGCCTTCATTGCTACTCTCGTAACCATGACCTTAT
TACGTGGTGTGACCATGGTTTATACCGATGGACGCCCAATTAGTACAGGCTTTTCGGAAGGTGCGGATACGTTTTCGCTG
TTAGGCACGGGTTATGTATTCGGTATCCCTGTCCCAATTTGGATTATGGCATTTGTCTTTGCTGCCTCTTGGTATGTATT
AAAACATACACGTATTGGGCGTTATATTTATGCACTTGGGGGGAATGAAGCCGCCACCCAATTATCTGGCATTAACGTCA
ATAAAATTAAAATCTTTGTTTTTGCCGTCAGTGGCTTCTTATCTGCCCTTGCCGGTCTGATTGTCACTTCACGTTTATCC
TCTGCTCAACCGACTGCCGGTGTGTCATATGAGCTTGATGCGATTGCCGCGGTTGTAGTCGGCGGAACAAGCTTAATGGG
CGGAAAAGGACGCGTCATGGGCACTTTAATTGGCGCATTGATTATTGGTTTCTTAAATAACGCGCTGAATTTACTGGATA
TTTCCTCTTACTATCAAATGATTGCAAAAGCATTAGTTATCTTAGTCGCGGTTTTAGCGGATAACTATTTAGGCACCAAA
AAAGTTTAA

Upstream 100 bases:

>100_bases
GGGCGAATTAGTGCAGAATTCCAACGTGGTGAAGCCACGCAAGAAAAATTATTAGCCGCAGCCATTGGCAAAAGTGCGCT
CTAAACCTGAAGGATTTATT

Downstream 100 bases:

>100_bases
CCCACTCACTCTGTAAGGAGAATGCAAATGAAAAAACTTCAAAAACTCACAACGTTAGCCTCAGCATTGATGTTAAGTTT
GGCAGTCAGTGGCACTGCAC

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MTTQAKPFQFGKFLIEQRSIIALLVLIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALT
GAIAASMVSTELPILLVIPVTLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFSEGADTFSL
LGTGYVFGIPVPIWIMAFVFAASWYVLKHTRIGRYIYALGGNEAATQLSGINVNKIKIFVFAVSGFLSALAGLIVTSRLS
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGTK
KV

Sequences:

>Translated_322_residues
MTTQAKPFQFGKFLIEQRSIIALLVLIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALT
GAIAASMVSTELPILLVIPVTLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFSEGADTFSL
LGTGYVFGIPVPIWIMAFVFAASWYVLKHTRIGRYIYALGGNEAATQLSGINVNKIKIFVFAVSGFLSALAGLIVTSRLS
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGTK
KV
>Mature_321_residues
TTQAKPFQFGKFLIEQRSIIALLVLIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTG
AIAASMVSTELPILLVIPVTLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFSEGADTFSLL
GTGYVFGIPVPIWIMAFVFAASWYVLKHTRIGRYIYALGGNEAATQLSGINVNKIKIFVFAVSGFLSALAGLIVTSRLSS
AQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGTKK
V

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=318, Percent_Identity=66.9811320754717, Blast_Score=410, Evalue=1e-116,
Organism=Escherichia coli, GI1790524, Length=315, Percent_Identity=39.6825396825397, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=37.5776397515528, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=35.3503184713376, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=37.6093294460641, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=37.2340425531915, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=36.2537764350453, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI145693214, Length=264, Percent_Identity=35.2272727272727, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787794, Length=298, Percent_Identity=31.2080536912752, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787793, Length=312, Percent_Identity=31.0897435897436, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33771; Mature: 33640

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQAKPFQFGKFLIEQRSIIALLVLIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
TFVILIAGIDLSVGSVLALTGAIAASMVSTELPILLVIPVTLLIGTLLGGISGVIVAKGK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCH
VQAFIATLVTMTLLRGVTMVYTDGRPISTGFSEGADTFSLLGTGYVFGIPVPIWIMAFVF
HHHHHHHHHHHHHHCCCEEEEECCEECCCCCCCCCCHHHHHHCCEEEECCHHHHHHHHHH
AASWYVLKHTRIGRYIYALGGNEAATQLSGINVNKIKIFVFAVSGFLSALAGLIVTSRLS
HHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQM
CCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKALVILVAVLADNYLGTKKV
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTQAKPFQFGKFLIEQRSIIALLVLIAIVSMINPDFFSVDNILNILRQTSVNAIIAVGM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
TFVILIAGIDLSVGSVLALTGAIAASMVSTELPILLVIPVTLLIGTLLGGISGVIVAKGK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCH
VQAFIATLVTMTLLRGVTMVYTDGRPISTGFSEGADTFSLLGTGYVFGIPVPIWIMAFVF
HHHHHHHHHHHHHHCCCEEEEECCEECCCCCCCCCCHHHHHHCCEEEECCHHHHHHHHHH
AASWYVLKHTRIGRYIYALGGNEAATQLSGINVNKIKIFVFAVSGFLSALAGLIVTSRLS
HHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQM
CCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKALVILVAVLADNYLGTKKV
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]