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The map label for this gene is cycA [H]

Identifier: 154248024

GI number: 154248024

Start: 4539914

End: 4540306

Strand: Direct

Name: cycA [H]

Synonym: Xaut_4103

Alternate gene names: 154248024

Gene position: 4539914-4540306 (Clockwise)

Preceding gene: 154248018

Following gene: 154248025

Centisome position: 85.51

GC content: 63.36

Gene sequence:

>393_bases
ATGCGTCTCATTATGGCTTCGGTTCTCATGCTTGCCGCTACCGGCTCGGCCTTTGCGGATCCCGATGTTGCGAAGGGCGA
GACCACCTTCAAGAAGTGCATGGCGTGCCACGCCATCGGCCCCGACGCCAAGGTGAAGGTCGGCCCGCCCCTGAACGGGA
TCGTCGGCGCCAAGTGGGCCCACTTCGAGGGCTATGCCTATTCCGCCGACATCAAGGACGGCGCCGCCGCCGGCAAGGTG
TGGGACGAGGCCACCCTGGACAACTACATCAGCAACCCCAAGGTGCTCGCCCCCAAGGGCAAGATGGCCTTCGCCGGCGT
CAAGAACGACGATGAGCGCAAGGACCTCATCGCTTTCCTCGCCCAGTTCAACGCCGACGGCAGCAAGAAGTAA

Upstream 100 bases:

>100_bases
TTTGTGCGCTGCAGCAAGGGTTTGGGCGATGCGGGTATTTTCATATATTCGTATATGTGAATAATATCGCCGGTCGCGAC
TGTCGAGGGAGGAAAGCTTC

Downstream 100 bases:

>100_bases
TCGGGGTGGCCTTATCGCACGTGCGATGATACCTCATCCCGCATTTGGGGGATGAGGAACTGTCGCGCTTCAGCCATCAA
GGGTTGTGCCGGTCAGGGCA

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MRLIMASVLMLAATGSAFADPDVAKGETTFKKCMACHAIGPDAKVKVGPPLNGIVGAKWAHFEGYAYSADIKDGAAAGKV
WDEATLDNYISNPKVLAPKGKMAFAGVKNDDERKDLIAFLAQFNADGSKK

Sequences:

>Translated_130_residues
MRLIMASVLMLAATGSAFADPDVAKGETTFKKCMACHAIGPDAKVKVGPPLNGIVGAKWAHFEGYAYSADIKDGAAAGKV
WDEATLDNYISNPKVLAPKGKMAFAGVKNDDERKDLIAFLAQFNADGSKK
>Mature_130_residues
MRLIMASVLMLAATGSAFADPDVAKGETTFKKCMACHAIGPDAKVKVGPPLNGIVGAKWAHFEGYAYSADIKDGAAAGKV
WDEATLDNYISNPKVLAPKGKMAFAGVKNDDERKDLIAFLAQFNADGSKK

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=102, Percent_Identity=43.1372549019608, Blast_Score=82, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17566554, Length=110, Percent_Identity=41.8181818181818, Blast_Score=85, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17539604, Length=100, Percent_Identity=41, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6322508, Length=109, Percent_Identity=39.4495412844037, Blast_Score=83, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=114, Percent_Identity=37.719298245614, Blast_Score=82, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=45, Blast_Score=83, Evalue=5e-17,
Organism=Drosophila melanogaster, GI17137204, Length=101, Percent_Identity=45.5445544554455, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13735; Mature: 13735

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIMASVLMLAATGSAFADPDVAKGETTFKKCMACHAIGPDAKVKVGPPLNGIVGAKWA
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEE
HFEGYAYSADIKDGAAAGKVWDEATLDNYISNPKVLAPKGKMAFAGVKNDDERKDLIAFL
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCEEEECCCCCCHHHHHHHHH
AQFNADGSKK
HHHCCCCCCC
>Mature Secondary Structure
MRLIMASVLMLAATGSAFADPDVAKGETTFKKCMACHAIGPDAKVKVGPPLNGIVGAKWA
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEE
HFEGYAYSADIKDGAAAGKVWDEATLDNYISNPKVLAPKGKMAFAGVKNDDERKDLIAFL
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCEEEECCCCCCHHHHHHHHH
AQFNADGSKK
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1697576; 174109; 7674304 [H]