Definition Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession NC_009720
Length 5,308,934

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The map label for this gene is dctD [H]

Identifier: 154247859

GI number: 154247859

Start: 4357261

End: 4358586

Strand: Direct

Name: dctD [H]

Synonym: Xaut_3936

Alternate gene names: 154247859

Gene position: 4357261-4358586 (Clockwise)

Preceding gene: 154247858

Following gene: 154247860

Centisome position: 82.07

GC content: 66.06

Gene sequence:

>1326_bases
ATGGTTGATGCCGACGCCATCGTCATCGAGGACGATGAGGACGTGAAGCTCGGCTGCCTGCAGGCGCTGGCGCTGGAGGG
CATCAAGGCCATCGGCTACGACAGCGTCGAGGCGGTGCCCAGGCCCCTGTCGCGGGATTTTCGCGGCGTCATCATCTCCG
ACATCCGGCTGCCGGGCATGGACGGCATGAGCTTCCTCGCCAAGCTCACCAACCACGATCCCGACCTGCCGGTCATCATG
ATCACCGGCCACGGCGACGTGGCGACCGCCGTGCAGGCCATGCGCGACGGCGCCTACGACTTCATCCAGAAGCCGTTCGC
GTCCCAGCACCTGGTGAGCGTGGTGCAGCGGGCGCTGGAGAAGCGCCGGCTCGCCATGGAGGTGCGACGGCTGCGCCGCC
AGCTCGCCGCCAAGGGCGACCTGGAAAGCCGCATCGTTGGCCATTCCCCCGCCATCGTGGAGCTGCGCGAGCTGGTGCAG
AACGTGGCGGCGGTGCCCACCGACGTGATGATCTTCGGCGAGACCGGCACCGGCAAGGAGCTGATCGCGCGCTGCCTGCA
CGACCTCTCCGGCCGGCGCGGGCCGTTCGTGGCGCTCAATTGCGGTGGGTTGCCGGAAACCCTGTTCGAAAGCGAGATCT
TCGGCCACGAGGCCGGTTCCTTCTCGGGCGCCACCAAGCAGCGCATCGGCAAGATCGAATATGCCAATGGCGGCACGCTG
TTCCTCGACGAGATCGAGAGCATGCCCATGGCCATGCAGGTGAAGTTCCTGCGCGTGTTGCAGGAGCGCGTGGTGGAGCG
GCTCGGCTCCAACAAGGTCATTCCGGTGGACTTCAGGGTGATCGCCGCCACCAAGGCCGATCTTCTGGAGCTGTCGAGGG
ACGGCCAGTTCCGCAGCGACCTGCATTTCCGCCTGAACATCGTGACCATCGATCTGCCGGCGCTGCGCAACCGGCGCGAG
GACATTCCGCTGCTGTTCGAATATTTCGTCAACCAGGCGGCGACCCGCCTCAACCGCGAGCCGCCGCCCATTCGCGAGCA
GGTCGTCCGTGAGCTGATCGCCCACAATTGGCCCGGCAATGTACGCGAGCTGCGCAACCAGGCCGAACGCTACGCGCTGG
GCCTCAGATCCGCACCGGGCTTCGAGGCGGCCGAGGGGCCGGTGTCGCTGGCCACCACGGTGGAGAATTTCGAACGCAGC
CTCATCGCCGAGGAGCTGAAGCGCAACGACGGCAACATCTCCCGGACCGCCGAAGCCATGGCCATCGCCAAGACCACCCT
GTTCGACAAGATCCGGAAGTACGATATCCGGGTGAAGGAAGGCTGA

Upstream 100 bases:

>100_bases
GTGCGCCGCTTCGGTGGCGACCTCACCGCCGCCAACACCGCCGCGGGCGGCGCTCGTTTCCGCGTCAGCCTGCGGCCTGT
CGAAGCCTCGGAGAACGATC

Downstream 100 bases:

>100_bases
GGAAAAACGCCGCCTGACTTCTCGAGATGAAAGTAAAACCGCGTTGCCGTAGCCCGGTAGCGCGGTTTTTGTTTGCGCGC
CTGCTCCGTGGGCCTTGAGA

Product: two component sigma54 specific Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGMDGMSFLAKLTNHDPDLPVIM
ITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALEKRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQ
NVAAVPTDVMIFGETGTGKELIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL
FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSDLHFRLNIVTIDLPALRNRRE
DIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGNVRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERS
LIAEELKRNDGNISRTAEAMAIAKTTLFDKIRKYDIRVKEG

Sequences:

>Translated_441_residues
MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGMDGMSFLAKLTNHDPDLPVIM
ITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALEKRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQ
NVAAVPTDVMIFGETGTGKELIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL
FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSDLHFRLNIVTIDLPALRNRRE
DIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGNVRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERS
LIAEELKRNDGNISRTAEAMAIAKTTLFDKIRKYDIRVKEG
>Mature_441_residues
MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGMDGMSFLAKLTNHDPDLPVIM
ITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALEKRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQ
NVAAVPTDVMIFGETGTGKELIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL
FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSDLHFRLNIVTIDLPALRNRRE
DIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGNVRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERS
LIAEELKRNDGNISRTAEAMAIAKTTLFDKIRKYDIRVKEG

Specific function: Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. When activated by dctB acts in conjunction with sigma-54 to activate the transcription of dctA [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=458, Percent_Identity=39.0829694323144, Blast_Score=313, Evalue=2e-86,
Organism=Escherichia coli, GI1790437, Length=446, Percent_Identity=36.9955156950673, Blast_Score=278, Evalue=7e-76,
Organism=Escherichia coli, GI1788905, Length=444, Percent_Identity=37.1621621621622, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI1790299, Length=463, Percent_Identity=35.2051835853132, Blast_Score=268, Evalue=4e-73,
Organism=Escherichia coli, GI87082117, Length=349, Percent_Identity=40.6876790830946, Blast_Score=241, Evalue=9e-65,
Organism=Escherichia coli, GI1789087, Length=330, Percent_Identity=43.6363636363636, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1789233, Length=320, Percent_Identity=39.6875, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI87081872, Length=235, Percent_Identity=44.2553191489362, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI87082152, Length=306, Percent_Identity=38.8888888888889, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1786524, Length=319, Percent_Identity=36.6771159874608, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1787583, Length=333, Percent_Identity=36.6366366366366, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI1789828, Length=243, Percent_Identity=34.9794238683128, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081858, Length=284, Percent_Identity=30.6338028169014, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 49028; Mature: 49028

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4 ; PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGM
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEECEECCCC
DGMSFLAKLTNHDPDLPVIMITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALE
CHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH
KRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQNVAAVPTDVMIFGETGTGKE
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
LIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCEE
FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSD
EHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHCCCCCCCC
LHFRLNIVTIDLPALRNRREDIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGN
CEEEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCH
VRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERSLIAEELKRNDGNISRTAEAM
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AIAKTTLFDKIRKYDIRVKEG
HHHHHHHHHHHHHHCCEEECC
>Mature Secondary Structure
MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGM
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEECEECCCC
DGMSFLAKLTNHDPDLPVIMITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALE
CHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH
KRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQNVAAVPTDVMIFGETGTGKE
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
LIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCEE
FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSD
EHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHCCCCCCCC
LHFRLNIVTIDLPALRNRREDIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGN
CEEEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCH
VRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERSLIAEELKRNDGNISRTAEAM
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AIAKTTLFDKIRKYDIRVKEG
HHHHHHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2134335; 2793824; 11481431 [H]