Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
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Accession | NC_009720 |
Length | 5,308,934 |
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The map label for this gene is dctD [H]
Identifier: 154247859
GI number: 154247859
Start: 4357261
End: 4358586
Strand: Direct
Name: dctD [H]
Synonym: Xaut_3936
Alternate gene names: 154247859
Gene position: 4357261-4358586 (Clockwise)
Preceding gene: 154247858
Following gene: 154247860
Centisome position: 82.07
GC content: 66.06
Gene sequence:
>1326_bases ATGGTTGATGCCGACGCCATCGTCATCGAGGACGATGAGGACGTGAAGCTCGGCTGCCTGCAGGCGCTGGCGCTGGAGGG CATCAAGGCCATCGGCTACGACAGCGTCGAGGCGGTGCCCAGGCCCCTGTCGCGGGATTTTCGCGGCGTCATCATCTCCG ACATCCGGCTGCCGGGCATGGACGGCATGAGCTTCCTCGCCAAGCTCACCAACCACGATCCCGACCTGCCGGTCATCATG ATCACCGGCCACGGCGACGTGGCGACCGCCGTGCAGGCCATGCGCGACGGCGCCTACGACTTCATCCAGAAGCCGTTCGC GTCCCAGCACCTGGTGAGCGTGGTGCAGCGGGCGCTGGAGAAGCGCCGGCTCGCCATGGAGGTGCGACGGCTGCGCCGCC AGCTCGCCGCCAAGGGCGACCTGGAAAGCCGCATCGTTGGCCATTCCCCCGCCATCGTGGAGCTGCGCGAGCTGGTGCAG AACGTGGCGGCGGTGCCCACCGACGTGATGATCTTCGGCGAGACCGGCACCGGCAAGGAGCTGATCGCGCGCTGCCTGCA CGACCTCTCCGGCCGGCGCGGGCCGTTCGTGGCGCTCAATTGCGGTGGGTTGCCGGAAACCCTGTTCGAAAGCGAGATCT TCGGCCACGAGGCCGGTTCCTTCTCGGGCGCCACCAAGCAGCGCATCGGCAAGATCGAATATGCCAATGGCGGCACGCTG TTCCTCGACGAGATCGAGAGCATGCCCATGGCCATGCAGGTGAAGTTCCTGCGCGTGTTGCAGGAGCGCGTGGTGGAGCG GCTCGGCTCCAACAAGGTCATTCCGGTGGACTTCAGGGTGATCGCCGCCACCAAGGCCGATCTTCTGGAGCTGTCGAGGG ACGGCCAGTTCCGCAGCGACCTGCATTTCCGCCTGAACATCGTGACCATCGATCTGCCGGCGCTGCGCAACCGGCGCGAG GACATTCCGCTGCTGTTCGAATATTTCGTCAACCAGGCGGCGACCCGCCTCAACCGCGAGCCGCCGCCCATTCGCGAGCA GGTCGTCCGTGAGCTGATCGCCCACAATTGGCCCGGCAATGTACGCGAGCTGCGCAACCAGGCCGAACGCTACGCGCTGG GCCTCAGATCCGCACCGGGCTTCGAGGCGGCCGAGGGGCCGGTGTCGCTGGCCACCACGGTGGAGAATTTCGAACGCAGC CTCATCGCCGAGGAGCTGAAGCGCAACGACGGCAACATCTCCCGGACCGCCGAAGCCATGGCCATCGCCAAGACCACCCT GTTCGACAAGATCCGGAAGTACGATATCCGGGTGAAGGAAGGCTGA
Upstream 100 bases:
>100_bases GTGCGCCGCTTCGGTGGCGACCTCACCGCCGCCAACACCGCCGCGGGCGGCGCTCGTTTCCGCGTCAGCCTGCGGCCTGT CGAAGCCTCGGAGAACGATC
Downstream 100 bases:
>100_bases GGAAAAACGCCGCCTGACTTCTCGAGATGAAAGTAAAACCGCGTTGCCGTAGCCCGGTAGCGCGGTTTTTGTTTGCGCGC CTGCTCCGTGGGCCTTGAGA
Product: two component sigma54 specific Fis family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 441
Protein sequence:
>441_residues MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGMDGMSFLAKLTNHDPDLPVIM ITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALEKRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQ NVAAVPTDVMIFGETGTGKELIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSDLHFRLNIVTIDLPALRNRRE DIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGNVRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERS LIAEELKRNDGNISRTAEAMAIAKTTLFDKIRKYDIRVKEG
Sequences:
>Translated_441_residues MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGMDGMSFLAKLTNHDPDLPVIM ITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALEKRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQ NVAAVPTDVMIFGETGTGKELIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSDLHFRLNIVTIDLPALRNRRE DIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGNVRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERS LIAEELKRNDGNISRTAEAMAIAKTTLFDKIRKYDIRVKEG >Mature_441_residues MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGMDGMSFLAKLTNHDPDLPVIM ITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALEKRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQ NVAAVPTDVMIFGETGTGKELIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSDLHFRLNIVTIDLPALRNRRE DIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGNVRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERS LIAEELKRNDGNISRTAEAMAIAKTTLFDKIRKYDIRVKEG
Specific function: Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. When activated by dctB acts in conjunction with sigma-54 to activate the transcription of dctA [H]
COG id: COG2204
COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 sigma-54 factor interaction domain [H]
Homologues:
Organism=Escherichia coli, GI1788550, Length=458, Percent_Identity=39.0829694323144, Blast_Score=313, Evalue=2e-86, Organism=Escherichia coli, GI1790437, Length=446, Percent_Identity=36.9955156950673, Blast_Score=278, Evalue=7e-76, Organism=Escherichia coli, GI1788905, Length=444, Percent_Identity=37.1621621621622, Blast_Score=274, Evalue=1e-74, Organism=Escherichia coli, GI1790299, Length=463, Percent_Identity=35.2051835853132, Blast_Score=268, Evalue=4e-73, Organism=Escherichia coli, GI87082117, Length=349, Percent_Identity=40.6876790830946, Blast_Score=241, Evalue=9e-65, Organism=Escherichia coli, GI1789087, Length=330, Percent_Identity=43.6363636363636, Blast_Score=238, Evalue=5e-64, Organism=Escherichia coli, GI1789233, Length=320, Percent_Identity=39.6875, Blast_Score=228, Evalue=4e-61, Organism=Escherichia coli, GI87081872, Length=235, Percent_Identity=44.2553191489362, Blast_Score=196, Evalue=3e-51, Organism=Escherichia coli, GI87082152, Length=306, Percent_Identity=38.8888888888889, Blast_Score=195, Evalue=4e-51, Organism=Escherichia coli, GI1786524, Length=319, Percent_Identity=36.6771159874608, Blast_Score=191, Evalue=1e-49, Organism=Escherichia coli, GI1787583, Length=333, Percent_Identity=36.6366366366366, Blast_Score=185, Evalue=5e-48, Organism=Escherichia coli, GI1789828, Length=243, Percent_Identity=34.9794238683128, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI87081858, Length=284, Percent_Identity=30.6338028169014, Blast_Score=124, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR011006 - InterPro: IPR009057 - InterPro: IPR002197 - InterPro: IPR002078 - InterPro: IPR001789 [H]
Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]
EC number: NA
Molecular weight: Translated: 49028; Mature: 49028
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4 ; PS00758 ARGE_DAPE_CPG2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGM CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEECEECCCC DGMSFLAKLTNHDPDLPVIMITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALE CHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH KRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQNVAAVPTDVMIFGETGTGKE HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHH LIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCEE FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSD EHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHCCCCCCCC LHFRLNIVTIDLPALRNRREDIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGN CEEEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCH VRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERSLIAEELKRNDGNISRTAEAM HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AIAKTTLFDKIRKYDIRVKEG HHHHHHHHHHHHHHCCEEECC >Mature Secondary Structure MVDADAIVIEDDEDVKLGCLQALALEGIKAIGYDSVEAVPRPLSRDFRGVIISDIRLPGM CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEECEECCCC DGMSFLAKLTNHDPDLPVIMITGHGDVATAVQAMRDGAYDFIQKPFASQHLVSVVQRALE CHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH KRRLAMEVRRLRRQLAAKGDLESRIVGHSPAIVELRELVQNVAAVPTDVMIFGETGTGKE HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHH LIARCLHDLSGRRGPFVALNCGGLPETLFESEIFGHEAGSFSGATKQRIGKIEYANGGTL HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCEE FLDEIESMPMAMQVKFLRVLQERVVERLGSNKVIPVDFRVIAATKADLLELSRDGQFRSD EHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHCCCCCCCC LHFRLNIVTIDLPALRNRREDIPLLFEYFVNQAATRLNREPPPIREQVVRELIAHNWPGN CEEEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCH VRELRNQAERYALGLRSAPGFEAAEGPVSLATTVENFERSLIAEELKRNDGNISRTAEAM HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AIAKTTLFDKIRKYDIRVKEG HHHHHHHHHHHHHHCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2134335; 2793824; 11481431 [H]