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The map label for this gene is rimM

Identifier: 154246453

GI number: 154246453

Start: 2806887

End: 2807444

Strand: Reverse

Name: rimM

Synonym: Xaut_2512

Alternate gene names: 154246453

Gene position: 2807444-2806887 (Counterclockwise)

Preceding gene: 154246454

Following gene: 154246452

Centisome position: 52.88

GC content: 69.89

Gene sequence:

>558_bases
ATGGCCGACCGCATCCTCGTCGCCCGCATCGGCGCCCCCCATGGCGTGAGGGGCGAGGTGCGCCTCTTCGTCTTCACCGA
AGATCCCGGCGCGGTGCTGGACTACGACCCGCTCACCGACGCCACCGGCAAGAAGCGCTTCCGCATCGCCGCCCTGCGCG
CGGCCAAGGACCATTTCGTCGCCCGCATCGAGGGCATCGCCGATCGCACCGCGGCCGAGGCGCTGACCAATTTGGACCTG
TTCGTCCCGCGCGAGGCCCTGCCGCCGCCGGACGACGACGACACCTTCTACCACGCCGACCTCATCGGCCTCGATGTCGT
GGACGAGGCCGGCGTTGTGATCGGCAAGGTGGTGGCGCTGCAGGATTTCGGCGCCGGCGACATCCTGGAATATGCCCCCA
CCCTGCCCGCCACCAAGGCCAAGACCCTGATGGTGCCGTTCTCAAAGGATGCGGTGCCGGTGGTGGACGTGCCCGGCCGG
CGCGTGGTCGTCGCCGAAGCCTTCGTGGAACGCCGCCCGGCAGAGCCGGAAGAGGGCGAGGACACTGGGGGCGAGTGA

Upstream 100 bases:

>100_bases
GCTAGAGCACGCGCCGGTCAGCCTGCCTTGCCGGGCTGATCGCAGAACGCGTGCTCTTGTCCGATACTGAGAGCCGAGAC
CCGTCCGTTCCGGAGACTTC

Downstream 100 bases:

>100_bases
GCGCTGCGCATTCCCACTTGATGCGCAGAGGGGCACCCGTTTGACTCGGACGCCCCCCTCCCCCATCACGCTGCCATGAC
CTCCCCGACCTTCCGCGCCA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKRFRIAALRAAKDHFVARIEGIADRTAAEALTNLDL
FVPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVVALQDFGAGDILEYAPTLPATKAKTLMVPFSKDAVPVVDVPGR
RVVVAEAFVERRPAEPEEGEDTGGE

Sequences:

>Translated_185_residues
MADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKRFRIAALRAAKDHFVARIEGIADRTAAEALTNLDL
FVPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVVALQDFGAGDILEYAPTLPATKAKTLMVPFSKDAVPVVDVPGR
RVVVAEAFVERRPAEPEEGEDTGGE
>Mature_184_residues
ADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKRFRIAALRAAKDHFVARIEGIADRTAAEALTNLDLF
VPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVVALQDFGAGDILEYAPTLPATKAKTLMVPFSKDAVPVVDVPGRR
VVVAEAFVERRPAEPEEGEDTGGE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=166, Percent_Identity=30.7228915662651, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_XANP2 (A7IIB1)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001417411.1
- ProteinModelPortal:   A7IIB1
- SMR:   A7IIB1
- STRING:   A7IIB1
- GeneID:   5421519
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_2512
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK13828
- BioCyc:   XAUT78245:XAUT_2512-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19887; Mature: 19756

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKRFRIAALRAAKDHFV
CCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEHHHHHHHHH
ARIEGIADRTAAEALTNLDLFVPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVVAL
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEE
QDFGAGDILEYAPTLPATKAKTLMVPFSKDAVPVVDVPGRRVVVAEAFVERRPAEPEEGE
ECCCCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEHHHHCCCCCCCCCC
DTGGE
CCCCC
>Mature Secondary Structure 
ADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKRFRIAALRAAKDHFV
CCEEEEEEECCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEHHHHHHHHH
ARIEGIADRTAAEALTNLDLFVPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVVAL
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEE
QDFGAGDILEYAPTLPATKAKTLMVPFSKDAVPVVDVPGRRVVVAEAFVERRPAEPEEGE
ECCCCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEHHHHCCCCCCCCCC
DTGGE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA