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The map label for this gene is ycaR [C]

Identifier: 154246155

GI number: 154246155

Start: 2474857

End: 2475279

Strand: Reverse

Name: ycaR [C]

Synonym: Xaut_2212

Alternate gene names: 154246155

Gene position: 2475279-2474857 (Counterclockwise)

Preceding gene: 154246157

Following gene: 154246153

Centisome position: 46.62

GC content: 68.79

Gene sequence:

>423_bases
ATGCCTGCATCAGCGGGCCTGATGGATCGAACCAGATTGGGGGTGAAACGCCCGCCCGCCCCCGCTATGGTGGCGCCGCC
CCGCAGCGGGGCGATCCGGCGCAGCCTCGCGTTTCTTCATGACGCCGGCCCGCGCCGGCTGGTGTCCAATGCGTTTTCTG
CACGCGAGCCGGTCTGCGCCGCGCCTGAAAACGCCCTGACGAGTGTTGCGATGATCCAAGCCCAGCGCCCCGGCCACGAC
GTGGACCCCAAGCTGCTCGAAATCCTGGTGTGCCCTCTCACCAAGGCGCCGCTGGAATATGACCGCGAGCGCCAGGAGCT
GGTCTCCCGCGCCGCGCGCCTCGCCTATCCCATCCGCGACGGCATCCCGATCATGCTGGCCGACGAGGCCCGCAAGCTCG
ACGAGAGCGAACTCTCCCGCTGA

Upstream 100 bases:

>100_bases
GATTCGGGCGGCGGTCCATGGGTGCCTTGTAACGCGTGCTGCCGGTGGTGGCCCCCGCTGCTTAGGGGACCGGCGGCCCC
GGCGATAACGAATCCGGCTG

Downstream 100 bases:

>100_bases
GGACAGGGCATCCGCGCCCTGCCCCCTGAGCGGGGAGCGGATCTCTAAAGCGCCTCGCCCCGCAGCAGCTTCGGCACCTG
CCCGGTGAGGCCCGCTGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MPASAGLMDRTRLGVKRPPAPAMVAPPRSGAIRRSLAFLHDAGPRRLVSNAFSAREPVCAAPENALTSVAMIQAQRPGHD
VDPKLLEILVCPLTKAPLEYDRERQELVSRAARLAYPIRDGIPIMLADEARKLDESELSR

Sequences:

>Translated_140_residues
MPASAGLMDRTRLGVKRPPAPAMVAPPRSGAIRRSLAFLHDAGPRRLVSNAFSAREPVCAAPENALTSVAMIQAQRPGHD
VDPKLLEILVCPLTKAPLEYDRERQELVSRAARLAYPIRDGIPIMLADEARKLDESELSR
>Mature_139_residues
PASAGLMDRTRLGVKRPPAPAMVAPPRSGAIRRSLAFLHDAGPRRLVSNAFSAREPVCAAPENALTSVAMIQAQRPGHDV
DPKLLEILVCPLTKAPLEYDRERQELVSRAARLAYPIRDGIPIMLADEARKLDESELSR

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family [H]

Homologues:

Organism=Escherichia coli, GI1787146, Length=59, Percent_Identity=49.1525423728814, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005651 [H]

Pfam domain/function: PF03966 Trm112p [H]

EC number: NA

Molecular weight: Translated: 15300; Mature: 15169

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASAGLMDRTRLGVKRPPAPAMVAPPRSGAIRRSLAFLHDAGPRRLVSNAFSAREPVCA
CCCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
APENALTSVAMIQAQRPGHDVDPKLLEILVCPLTKAPLEYDRERQELVSRAARLAYPIRD
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHCC
GIPIMLADEARKLDESELSR
CCCEEECCCHHHCCHHHCCC
>Mature Secondary Structure 
PASAGLMDRTRLGVKRPPAPAMVAPPRSGAIRRSLAFLHDAGPRRLVSNAFSAREPVCA
CCCCCCCHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
APENALTSVAMIQAQRPGHDVDPKLLEILVCPLTKAPLEYDRERQELVSRAARLAYPIRD
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHCC
GIPIMLADEARKLDESELSR
CCCEEECCCHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]