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The map label for this gene is ompR [H]

Identifier: 154246098

GI number: 154246098

Start: 2416373

End: 2417158

Strand: Direct

Name: ompR [H]

Synonym: Xaut_2155

Alternate gene names: 154246098

Gene position: 2416373-2417158 (Clockwise)

Preceding gene: 154246089

Following gene: 154246099

Centisome position: 45.52

GC content: 70.36

Gene sequence:

>786_bases
ATGCAATGGAGGGCGCGGCGGAGGCGGGTCTCCGCTAGACTCGGCGAAAAGGAGACGCCGGTGCAGTCCGAAGGCGCAAC
GCATATTCTCGTCGTCGATGACGATCTCGAAATCCGGAAATTGCTCGGGCGCTACCTGGCGGCCCAGGGCTTCCGCGTCA
CCACGGCCGGCGACGGGCGGGAGATGGAGGAGAAGCTCGCCACCCAGCGCATCGACTTCGTGGTGCTCGACCTGATGCTG
CCGGACGCCTCCGGCCTCGATTTGTGCCGCGCCCTGCGCAACCGCTCGAAGATCCCCGTCATCCTGCTCACCGCGCTGAA
GGAGGATGTGGACCGCATCATCGGGCTGGAGATCGGCGCCGACGATTATCTCGGCAAGCCGTTCAACCCGCGCGAGCTGG
TGGCGCGCATCCGCGCCGTGCTGCGGCGCACCGGCGCGGCCGAGCCGGAGCCGGTGGCGGCCACCGCCTTCCGCTTCGCC
CGCTTCCGTGCCGAGCCGGAGCTGCGCCGCGTGACCGACGCCGAGGGAGTGGAGGTGGCGCTCACCGGCGCCGAGTTCGA
CCTGCTGATGGCGTTCCTGGAGCGGCCGGGCCGCATCCTCTCCCGCGAGCAGCTGCTGGACATCACCCGTGGCCGCGAGG
CCGGGCCGTTCGACCGCTCGGTGGACGTGCTGGTGAGCCGCCTGCGGCGCAAGCTCGGCGACCAGGGCGCGTTCCAGATC
CTGAAGACCCTGCGCAACGGCGGCTATCAGCTGGCGGTGCGGGTGGACCGGGAGGACGCCTCGTGA

Upstream 100 bases:

>100_bases
CCCCCTCCCGTTGCTGGCGAAGGTCGGGACATGTCCCAAGGTGTCGGCGGTGGGCGAATTTGTATCGCAATGTTGCTGAG
AGCCCGCAGGCAACGCTTCG

Downstream 100 bases:

>100_bases
GGACCCTGCGCGCGCAGGTAACCGCGCTTCTGGTGGTGGCCGTTCTGGTGGTGACGGCGCTGGCCAACGTCGCCTCTTTC
TTTCTGACCCATCCCGAATG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MQWRARRRRVSARLGEKETPVQSEGATHILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQRIDFVVLDLML
PDASGLDLCRALRNRSKIPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRTGAAEPEPVAATAFRFA
RFRAEPELRRVTDAEGVEVALTGAEFDLLMAFLERPGRILSREQLLDITRGREAGPFDRSVDVLVSRLRRKLGDQGAFQI
LKTLRNGGYQLAVRVDREDAS

Sequences:

>Translated_261_residues
MQWRARRRRVSARLGEKETPVQSEGATHILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQRIDFVVLDLML
PDASGLDLCRALRNRSKIPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRTGAAEPEPVAATAFRFA
RFRAEPELRRVTDAEGVEVALTGAEFDLLMAFLERPGRILSREQLLDITRGREAGPFDRSVDVLVSRLRRKLGDQGAFQI
LKTLRNGGYQLAVRVDREDAS
>Mature_261_residues
MQWRARRRRVSARLGEKETPVQSEGATHILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQRIDFVVLDLML
PDASGLDLCRALRNRSKIPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRTGAAEPEPVAATAFRFA
RFRAEPELRRVTDAEGVEVALTGAEFDLLMAFLERPGRILSREQLLDITRGREAGPFDRSVDVLVSRLRRKLGDQGAFQI
LKTLRNGGYQLAVRVDREDAS

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=45.7777777777778, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=37.9912663755458, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI2367329, Length=225, Percent_Identity=43.1111111111111, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1787229, Length=231, Percent_Identity=39.3939393939394, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786599, Length=232, Percent_Identity=38.7931034482759, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788394, Length=237, Percent_Identity=36.2869198312236, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=36.480686695279, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=38.4955752212389, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=36.283185840708, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1786911, Length=207, Percent_Identity=37.6811594202899, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789402, Length=225, Percent_Identity=33.7777777777778, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787375, Length=231, Percent_Identity=30.3030303030303, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=30.4932735426009, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1790552, Length=229, Percent_Identity=35.3711790393013, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790299, Length=127, Percent_Identity=37.7952755905512, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788550, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790437, Length=144, Percent_Identity=29.8611111111111, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 29316; Mature: 29316

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWRARRRRVSARLGEKETPVQSEGATHILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGR
CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCH
EMEEKLATQRIDFVVLDLMLPDASGLDLCRALRNRSKIPVILLTALKEDVDRIIGLEIGA
HHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCEECC
DDYLGKPFNPRELVARIRAVLRRTGAAEPEPVAATAFRFARFRAEPELRRVTDAEGVEVA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEE
LTGAEFDLLMAFLERPGRILSREQLLDITRGREAGPFDRSVDVLVSRLRRKLGDQGAFQI
EECCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH
LKTLRNGGYQLAVRVDREDAS
HHHHHCCCEEEEEEECCCCCC
>Mature Secondary Structure
MQWRARRRRVSARLGEKETPVQSEGATHILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGR
CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCH
EMEEKLATQRIDFVVLDLMLPDASGLDLCRALRNRSKIPVILLTALKEDVDRIIGLEIGA
HHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCEECC
DDYLGKPFNPRELVARIRAVLRRTGAAEPEPVAATAFRFARFRAEPELRRVTDAEGVEVA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEE
LTGAEFDLLMAFLERPGRILSREQLLDITRGREAGPFDRSVDVLVSRLRRKLGDQGAFQI
EECCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH
LKTLRNGGYQLAVRVDREDAS
HHHHHCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]