Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
---|---|
Accession | NC_009720 |
Length | 5,308,934 |
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The map label for this gene is menB [H]
Identifier: 154244862
GI number: 154244862
Start: 1023670
End: 1024452
Strand: Direct
Name: menB [H]
Synonym: Xaut_0912
Alternate gene names: 154244862
Gene position: 1023670-1024452 (Clockwise)
Preceding gene: 154244861
Following gene: 154244863
Centisome position: 19.28
GC content: 66.03
Gene sequence:
>783_bases ATGAGCTATACTGACATTCTCTATGAGGTGCGCGGCGGCGCCGCCTGGATCACCATCAACCGGCCGGACAAATACAACGC CTTCCGCGGCCACACCGTGGACGAGCTGATCCACGCCTTCCAGACCGCAGGCTGGGACCGCAAGGTCGGCGTGATCGTGC TGACCGGCGCGGGCGACAAGGCATTCTGCACCGGCGGCGACCAGTCGGCCCACGACGGCCAGTATGACGGGCGCGGCGTC ATCGGCCTGCCCATCGATGAATTGCAGAGCCTGATCCGCGACGTGCCGAAGCCTGTCATCGCCCGCGTCAATGGCTTCGC CATCGGCGGCGGCAACGTGCTCGCCACCATCTGTGACCTGACCATCGCTTCCGACAAGGCCCAGTTCGGCCAGGTGGGCC CCAAGGTGGGCTCGGTGGATCCGGGCTTCGGCACCGCCTATCTCGCCCGCGTGGTCGGCGAGAAGAAGGCTCGCGAGATC TGGTATCTCAACAAACGCTATAGCGCCGCCGAGGCCCTTGCCATGGGCCTTGCCAATGCGGTCGTGCCCCACGAGGAACT GGACGCCGAGGTGGACCGCTGGGTGGCCGAGCTGATGGACCGCTCGCCCACGGCGCTTGCCCTCGCCAAGGTGTCGTTCA ACGCCGACAGCGAGAACATCCGGGGCATCTCCGCCCTCGGCATGCGCGCGCTCAGCCTCTACTACGACACCGACGAGAGC AAGGAGGGCGGTGTCGCCTTCCGCGAGAAGCGCAAGCCCGATTTCCGCAAGTTCGGAAAGTAG
Upstream 100 bases:
>100_bases GGCGCCATCGTGTTCCTGTCCAGTGACGACGCCGCCTTCATCACCGGCCAGGTGATATCGGTCTCCGGCGGCCTCACCAT GCACGGTTGAGGGGGAAACC
Downstream 100 bases:
>100_bases GCCGGACCGCCACCGGGCAGGTGGGCCCGCCGTCCTGTCCGGTGGCTTCAGTCCCCCGAACGGGGGTGTGCCGTGAGGCG ATCCCGTCCCGCCATGGGCG
Product: naphthoate synthase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSYTDILYEVRGGAAWITINRPDKYNAFRGHTVDELIHAFQTAGWDRKVGVIVLTGAGDKAFCTGGDQSAHDGQYDGRGV IGLPIDELQSLIRDVPKPVIARVNGFAIGGGNVLATICDLTIASDKAQFGQVGPKVGSVDPGFGTAYLARVVGEKKAREI WYLNKRYSAAEALAMGLANAVVPHEELDAEVDRWVAELMDRSPTALALAKVSFNADSENIRGISALGMRALSLYYDTDES KEGGVAFREKRKPDFRKFGK
Sequences:
>Translated_260_residues MSYTDILYEVRGGAAWITINRPDKYNAFRGHTVDELIHAFQTAGWDRKVGVIVLTGAGDKAFCTGGDQSAHDGQYDGRGV IGLPIDELQSLIRDVPKPVIARVNGFAIGGGNVLATICDLTIASDKAQFGQVGPKVGSVDPGFGTAYLARVVGEKKAREI WYLNKRYSAAEALAMGLANAVVPHEELDAEVDRWVAELMDRSPTALALAKVSFNADSENIRGISALGMRALSLYYDTDES KEGGVAFREKRKPDFRKFGK >Mature_259_residues SYTDILYEVRGGAAWITINRPDKYNAFRGHTVDELIHAFQTAGWDRKVGVIVLTGAGDKAFCTGGDQSAHDGQYDGRGVI GLPIDELQSLIRDVPKPVIARVNGFAIGGGNVLATICDLTIASDKAQFGQVGPKVGSVDPGFGTAYLARVVGEKKAREIW YLNKRYSAAEALAMGLANAVVPHEELDAEVDRWVAELMDRSPTALALAKVSFNADSENIRGISALGMRALSLYYDTDESK EGGVAFREKRKPDFRKFGK
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=275, Percent_Identity=35.6363636363636, Blast_Score=131, Evalue=5e-31, Organism=Homo sapiens, GI31542718, Length=240, Percent_Identity=30.4166666666667, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI45643119, Length=245, Percent_Identity=27.7551020408163, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI260275230, Length=245, Percent_Identity=27.7551020408163, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI260274832, Length=245, Percent_Identity=27.7551020408163, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4502327, Length=260, Percent_Identity=28.4615384615385, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI25453481, Length=215, Percent_Identity=26.5116279069767, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI51538573, Length=215, Percent_Identity=26.5116279069767, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4757966, Length=215, Percent_Identity=26.5116279069767, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI51538581, Length=215, Percent_Identity=26.5116279069767, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI70995211, Length=268, Percent_Identity=27.6119402985075, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1788597, Length=262, Percent_Identity=51.9083969465649, Blast_Score=263, Evalue=1e-71, Organism=Escherichia coli, GI1787659, Length=243, Percent_Identity=30.4526748971193, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI221142681, Length=262, Percent_Identity=30.9160305343511, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082183, Length=267, Percent_Identity=28.4644194756554, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787660, Length=259, Percent_Identity=31.6602316602317, Blast_Score=78, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17554946, Length=246, Percent_Identity=32.9268292682927, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17540714, Length=210, Percent_Identity=32.3809523809524, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI25145438, Length=244, Percent_Identity=32.7868852459016, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17549921, Length=211, Percent_Identity=27.9620853080569, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17535521, Length=215, Percent_Identity=26.5116279069767, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560910, Length=174, Percent_Identity=32.7586206896552, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17534483, Length=263, Percent_Identity=26.9961977186312, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI20129971, Length=241, Percent_Identity=35.6846473029046, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI24653477, Length=241, Percent_Identity=35.6846473029046, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI24653139, Length=268, Percent_Identity=27.6119402985075, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI21357171, Length=182, Percent_Identity=29.6703296703297, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI19922422, Length=253, Percent_Identity=23.3201581027668, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24654903, Length=192, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24650670, Length=180, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 28170; Mature: 28039
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYTDILYEVRGGAAWITINRPDKYNAFRGHTVDELIHAFQTAGWDRKVGVIVLTGAGDK CCHHHEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCC AFCTGGDQSAHDGQYDGRGVIGLPIDELQSLIRDVPKPVIARVNGFAIGGGNVLATICDL EEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCHHHHHHCCCEEECCCHHEEHHHHH TIASDKAQFGQVGPKVGSVDPGFGTAYLARVVGEKKAREIWYLNKRYSAAEALAMGLANA HCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHEEEECCHHHHHHHHHHHHHHH VVPHEELDAEVDRWVAELMDRSPTALALAKVSFNADSENIRGISALGMRALSLYYDTDES CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHEEEEECCCCC KEGGVAFREKRKPDFRKFGK CCCCCEEHHCCCCCHHHCCC >Mature Secondary Structure SYTDILYEVRGGAAWITINRPDKYNAFRGHTVDELIHAFQTAGWDRKVGVIVLTGAGDK CHHHEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCC AFCTGGDQSAHDGQYDGRGVIGLPIDELQSLIRDVPKPVIARVNGFAIGGGNVLATICDL EEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCHHHHHHCCCEEECCCHHEEHHHHH TIASDKAQFGQVGPKVGSVDPGFGTAYLARVVGEKKAREIWYLNKRYSAAEALAMGLANA HCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHEEEECCHHHHHHHHHHHHHHH VVPHEELDAEVDRWVAELMDRSPTALALAKVSFNADSENIRGISALGMRALSLYYDTDES CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHEEEEECCCCC KEGGVAFREKRKPDFRKFGK CCCCCEEHHCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1629163; 8566759; 9387221; 9384377 [H]