Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
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Accession | NC_009720 |
Length | 5,308,934 |
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The map label for this gene is 154244429
Identifier: 154244429
GI number: 154244429
Start: 516437
End: 517564
Strand: Direct
Name: 154244429
Synonym: Xaut_0472
Alternate gene names: NA
Gene position: 516437-517564 (Clockwise)
Preceding gene: 154244425
Following gene: 154244431
Centisome position: 9.73
GC content: 70.48
Gene sequence:
>1128_bases ATGACCGTGCGAGCGACGGAGCACCAGAAGCCCGGCATTCTGCCCGCCGAGGCCATTTCGGCGCTGAAGGCGACGGGCGC CATCTCCTGCCGCCGGCCGCTCGATGCGGACCAGATCCAGCCGGCGAGCCTGGACCTGCGCCTCGGCCGCACGGCGTGGC GGGTGCGCGCAAGCTTCCTGCCGGGGGCCGGCGTCTCGGTGAAGGAGCGCCTCGCCGACCTCGCCCTGCACGATTTCGAC CTCGCCAAGGGCGCGGTGCTGGAGACCGGCTGCGTCTATCTGGTGGAATTGTTCGAGCGCCTGAAGCTGCCCTTTGATCT GGCGGCGGCGGCGAACCCCAAGAGCTCCACTGGGCGGCTCGACGTGTTCGTGCGCGTCATCACCGACGGCGCGCGGGCCT TCGACACCATTCCCGCCGGCTACAACGGCCCGCTCTATCTGGAAATCTCTCCGCGCACCTTCCCCATCCTGGTGCGCACC GGCTCGCGCCTGTCGCAGGTGCGCTTCCGTCGCGGCGTGTCGCGGCTGTCGGATCTCGAATTGCTGAGCCTGCAATCCGC CGAATGCCTGGTGGATGCCCCCCAGCCGGACGTGGCGGCGGGCGGCATCGCGCTGGGCGTCGATCTCGCCGGCGAGGTGA TCCCCGGCCTGCAGGGCTTCCGCGCGAAGAAGCATACCGGCGTCATCGACGTGGACGAGGCCGGCGTGCTCGACGTGGAG GATTTCTGGGAGCCCATCCGGCTGCGGCCGGGCCGCACGGCGGGGCTGGTGCTGGACCCCGACGCCTTCTACATCCTCGC CTCGCGGGAGGCGGTGCACGTGCCGCCGGACTATGCGGCGGAGATGGTGCCGTTCGATCCCCTGGTGGGCGAGTTCCGGG TGCACTATGCCGGCTTCTTCGATCCCGGCTTCGGCAATCCGGCGGCCGGCGGGCGCGGCGCCCGCGCGGTGCTGGAGGTG CGCTCGCGGGAGGTGCCCTTCATTCTGGAGCATGGCCAGACCGTGGGACGCCTCGTCTATGAGCGCATGGCGGGCCGCCC CGGCACGCTCTACGGCGCCGACATGCGTTCCCACTACCAGGGGCAGGGGCTGAAGCTCTCCAAGCATTTCAAGCCCGTGG GGAGCTGA
Upstream 100 bases:
>100_bases GCTCAAATTCACCACGAGTGAGCGGCAGTAAACGCCCGGCCTCCCCTTGGCGTCAAGGGTTTCGTCCGGTAAAGCGAACA AAAAGGACGGGAAAGCGGAT
Downstream 100 bases:
>100_bases GCGCCAGCGGCGCCTCACCCCTTGCCGATGGTCGAGGTGGCGGCCGCGCGGCCGGCGGCGATCATCTCCTCCTTGCGCCA CGGCACGGCGTCGTTGAGCG
Product: 2'-deoxycytidine 5'-triphosphate deaminase
Products: dUTP; NH3
Alternate protein names: 2-Deoxycytidine 5-Triphosphate Deaminase; 2-Deoxycytidine 5'-Triphosphate Deaminase Superfamily; 2`-Deoxycytidine 5`-Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MTVRATEHQKPGILPAEAISALKATGAISCRRPLDADQIQPASLDLRLGRTAWRVRASFLPGAGVSVKERLADLALHDFD LAKGAVLETGCVYLVELFERLKLPFDLAAAANPKSSTGRLDVFVRVITDGARAFDTIPAGYNGPLYLEISPRTFPILVRT GSRLSQVRFRRGVSRLSDLELLSLQSAECLVDAPQPDVAAGGIALGVDLAGEVIPGLQGFRAKKHTGVIDVDEAGVLDVE DFWEPIRLRPGRTAGLVLDPDAFYILASREAVHVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGNPAAGGRGARAVLEV RSREVPFILEHGQTVGRLVYERMAGRPGTLYGADMRSHYQGQGLKLSKHFKPVGS
Sequences:
>Translated_375_residues MTVRATEHQKPGILPAEAISALKATGAISCRRPLDADQIQPASLDLRLGRTAWRVRASFLPGAGVSVKERLADLALHDFD LAKGAVLETGCVYLVELFERLKLPFDLAAAANPKSSTGRLDVFVRVITDGARAFDTIPAGYNGPLYLEISPRTFPILVRT GSRLSQVRFRRGVSRLSDLELLSLQSAECLVDAPQPDVAAGGIALGVDLAGEVIPGLQGFRAKKHTGVIDVDEAGVLDVE DFWEPIRLRPGRTAGLVLDPDAFYILASREAVHVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGNPAAGGRGARAVLEV RSREVPFILEHGQTVGRLVYERMAGRPGTLYGADMRSHYQGQGLKLSKHFKPVGS >Mature_374_residues TVRATEHQKPGILPAEAISALKATGAISCRRPLDADQIQPASLDLRLGRTAWRVRASFLPGAGVSVKERLADLALHDFDL AKGAVLETGCVYLVELFERLKLPFDLAAAANPKSSTGRLDVFVRVITDGARAFDTIPAGYNGPLYLEISPRTFPILVRTG SRLSQVRFRRGVSRLSDLELLSLQSAECLVDAPQPDVAAGGIALGVDLAGEVIPGLQGFRAKKHTGVIDVDEAGVLDVED FWEPIRLRPGRTAGLVLDPDAFYILASREAVHVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGNPAAGGRGARAVLEVR SREVPFILEHGQTVGRLVYERMAGRPGTLYGADMRSHYQGQGLKLSKHFKPVGS
Specific function: Unknown
COG id: COG0717
COG function: function code F; Deoxycytidine deaminase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.5.4.13
Molecular weight: Translated: 40513; Mature: 40382
Theoretical pI: Translated: 7.66; Mature: 7.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVRATEHQKPGILPAEAISALKATGAISCRRPLDADQIQPASLDLRLGRTAWRVRASFL CCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCEEEEEEECC PGAGVSVKERLADLALHDFDLAKGAVLETGCVYLVELFERLKLPFDLAAAANPKSSTGRL CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCE DVFVRVITDGARAFDTIPAGYNGPLYLEISPRTFPILVRTGSRLSQVRFRRGVSRLSDLE EEEEEEECCCCHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCH LLSLQSAECLVDAPQPDVAAGGIALGVDLAGEVIPGLQGFRAKKHTGVIDVDEAGVLDVE HEECCCCCEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEHH DFWEPIRLRPGRTAGLVLDPDAFYILASREAVHVPPDYAAEMVPFDPLVGEFRVHYAGFF HHCCHHCCCCCCCCCEEECCCEEEEEECCCEEECCCCHHHHCCCCCCCCCCEEEEEEEEE DPGFGNPAAGGRGARAVLEVRSREVPFILEHGQTVGRLVYERMAGRPGTLYGADMRSHYQ CCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEECCHHHHHC GQGLKLSKHFKPVGS CCCEEEHHCCCCCCC >Mature Secondary Structure TVRATEHQKPGILPAEAISALKATGAISCRRPLDADQIQPASLDLRLGRTAWRVRASFL CCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCEEEEEEECC PGAGVSVKERLADLALHDFDLAKGAVLETGCVYLVELFERLKLPFDLAAAANPKSSTGRL CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCE DVFVRVITDGARAFDTIPAGYNGPLYLEISPRTFPILVRTGSRLSQVRFRRGVSRLSDLE EEEEEEECCCCHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCH LLSLQSAECLVDAPQPDVAAGGIALGVDLAGEVIPGLQGFRAKKHTGVIDVDEAGVLDVE HEECCCCCEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEHH DFWEPIRLRPGRTAGLVLDPDAFYILASREAVHVPPDYAAEMVPFDPLVGEFRVHYAGFF HHCCHHCCCCCCCCCEEECCCEEEEEECCCEEECCCCHHHHCCCCCCCCCCEEEEEEEEE DPGFGNPAAGGRGARAVLEVRSREVPFILEHGQTVGRLVYERMAGRPGTLYGADMRSHYQ CCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEECCHHHHHC GQGLKLSKHFKPVGS CCCEEEHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: dCTP; H2O
Specific reaction: dCTP + H2O = dUTP + NH3
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA