BacMap

Definition	Campylobacter jejuni subsp. doylei 269.97, complete genome.
Accession	NC_009707
Length	1,845,106

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The map label for this gene is ydfG [H]

Identifier: 153950969

GI number: 153950969

Start: 1034287

End: 1035036

Strand: Direct

Name: ydfG [H]

Synonym: JJD26997_1181

Alternate gene names: 153950969

Gene position: 1034287-1035036 (Clockwise)

Preceding gene: 153952145

Following gene: 153952113

Centisome position: 56.06

GC content: 33.33

Gene sequence:

>750_bases
ATGAAAACCGCATTTATTACAGGAGCTAGTTCAGGTTTTGGTAGAGCTTGTGTTGAAGCTTTTATACAAGAAGGCTACAA
AGTAATCGCTCTTGCTAGACGCAAAGAACGCCTAGAAGAGCTAAAAAATACTCACAAAGATAAGATTTACACCCTTTGCA
TAGATGTAAGAAATCAAAAAGAAATCTTTGAAGCTATTGAAAATTTACCCAAAGAATTTCAAGAAATTGATGTGCTTTTT
AATAATGCAGGCTTGGCTTTAGGAGTAGATGAATTTGATAAATTAAACCTTGAAGATATTAACACCATGGTAGATACAAA
TATCAAAGGGTTTTTATATGTTGCAAAAGCTATTATTCCTATACTTCGCAAACAAAAAAATGCTTATATTTTTAACTTAG
GTTCAGTTGCAGGACGCAATCCTTATTTTGGAGGCAATGTGTATTGTGGAACCAAAGCCTTTGTAGGACAATTCTCCTTA
GCCCTAAGAAATGATCTTAGAGGAAGCAATATCAAAGTAACAAATATTGCTCCAGGACTTTGCAAAACTGAATTTAGTGA
AGTGCGTTTTAAAGGAGATATCCAAAAATCTGATGCAGTCTATGAAAATACGCAATTTATCAGTGCTAATGATATTGCCA
AAGTGGTAATGTCTATCATTAACCTACCAAGTCATATTAATGTTAATGAAATCGAGCTTATGCCGGTAACACAAACTTGG
AATGGATTTTATATAGAAAGAGATGAATGA

Upstream 100 bases:

>100_bases
TTGACTTTGCGCTAACGGCAGGTAAAAAAGAAAATGCTAATTATCTAAAAAGCTTGGGTTTAAAAGCAAATGAAAATCTA
TTTTACGGAGGTAATTTAGA

Downstream 100 bases:

>100_bases
ATAAATTTTTAGTTTTATTGTTTTTACCTTTAGTTGCATTTGCAAACTCCTCAGAAGCAGCTGCAAATGCTAATTTATTC
GGAACTTTTACGCTTATACC

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNTHKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLF
NNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKSDAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
NGFYIERDE

Sequences:

>Translated_249_residues
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNTHKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLF
NNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKSDAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
NGFYIERDE
>Mature_249_residues
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNTHKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLF
NNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKSDAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
NGFYIERDE

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=27.0161290322581, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI150247226, Length=192, Percent_Identity=31.7708333333333, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI19743808, Length=184, Percent_Identity=29.3478260869565, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40548397, Length=205, Percent_Identity=30.2439024390244, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI214010158, Length=205, Percent_Identity=30.2439024390244, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI214010156, Length=205, Percent_Identity=30.2439024390244, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI22758144, Length=205, Percent_Identity=30.2439024390244, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=28.4210526315789, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI7705855, Length=193, Percent_Identity=26.4248704663212, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=26.4550264550265, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI22507405, Length=184, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI50726952, Length=186, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=248, Percent_Identity=24.5967741935484, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254986, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7657478, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI142976729, Length=187, Percent_Identity=25.668449197861, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=26.3736263736264, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI210032110, Length=235, Percent_Identity=23.8297872340426, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4504503, Length=182, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=28.7179487179487, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787820, Length=244, Percent_Identity=48.7704918032787, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=29.0816326530612, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082100, Length=192, Percent_Identity=31.25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786812, Length=192, Percent_Identity=24.4791666666667, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367175, Length=232, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790717, Length=192, Percent_Identity=26.5625, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=215, Percent_Identity=31.1627906976744, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=214, Percent_Identity=28.9719626168224, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=228, Percent_Identity=22.3684210526316, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=27.0935960591133, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=204, Percent_Identity=27.9411764705882, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=27.6381909547739, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=230, Percent_Identity=21.7391304347826, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25152911, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=199, Percent_Identity=25.6281407035176, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=205, Percent_Identity=29.7560975609756, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=27.363184079602, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=154, Percent_Identity=29.2207792207792, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=29.5566502463054, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=228, Percent_Identity=30.2631578947368, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=29.4416243654822, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=203, Percent_Identity=25.615763546798, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=206, Percent_Identity=26.2135922330097, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=37.9591836734694, Blast_Score=178, Evalue=8e-46,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=28.4974093264249, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007236, Length=254, Percent_Identity=28.740157480315, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI28571387, Length=248, Percent_Identity=31.0483870967742, Blast_Score=114, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24641388, Length=252, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=26.3157894736842, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=26.3157894736842, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI281364494, Length=252, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=27.3809523809524, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24663911, Length=253, Percent_Identity=25.6916996047431, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24643142, Length=184, Percent_Identity=30.4347826086957, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=31.1475409836066, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=26.4822134387352, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21358495, Length=227, Percent_Identity=27.7533039647577, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24648944, Length=243, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=27.5675675675676, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=26.2886597938144, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI17737361, Length=193, Percent_Identity=26.9430051813472, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=25.2688172043011, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=25.2688172043011, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28574402, Length=189, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24584744, Length=189, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21357673, Length=189, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355319, Length=220, Percent_Identity=27.7272727272727, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221331216, Length=238, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24665247, Length=238, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24665243, Length=238, Percent_Identity=26.890756302521, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331218, Length=238, Percent_Identity=26.890756302521, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639444, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571526, Length=188, Percent_Identity=26.5957446808511, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28023; Mature: 28023

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNTHKDKIYTLCIDVRNQK
CCEEEEECCCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCHH
EIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAIIP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
ILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSLALRNDLRGSNIKVTNIAPGL
HHHCCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCH
CKTEFSEVRFKGDIQKSDAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
HHHHHHHHEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
NGFYIERDE
CCEEEEECC
>Mature Secondary Structure
MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNTHKDKIYTLCIDVRNQK
CCEEEEECCCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCHH
EIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINTMVDTNIKGFLYVAKAIIP
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
ILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSLALRNDLRGSNIKVTNIAPGL
HHHCCCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCH
CKTEFSEVRFKGDIQKSDAVYENTQFISANDIAKVVMSIINLPSHINVNEIELMPVTQTW
HHHHHHHHEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
NGFYIERDE
CCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]