| Definition | Clostridium botulinum A str. Hall, complete genome. |
|---|---|
| Accession | NC_009698 |
| Length | 3,760,560 |
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The map label for this gene is cdr [H]
Identifier: 153937498
GI number: 153937498
Start: 1680170
End: 1681870
Strand: Direct
Name: cdr [H]
Synonym: CLC_1610
Alternate gene names: 153937498
Gene position: 1680170-1681870 (Clockwise)
Preceding gene: 153936768
Following gene: 153935246
Centisome position: 44.68
GC content: 31.1
Gene sequence:
>1701_bases ATGAGCAAAAAATATTTAATAATAGGAGGAGTTGCTGGTGGTGCATCTACCGCAGCTAGACTTAGAAGACTTAGTGAGGA AGATCAAATAATAATGTTTGAAAAAGATCCCTATGTATCCTTTTCAAATTGTAGCTTACCTTATCATTTGAGTGGAGTTG TAGAGGATTCCAATAGTTTAGTACTTATGACTCCAGAACAATTTAAAGCTCAATACAATATAGAGGCTAGAGTAAATAAT GAAGTTATAACAATTAATAGAGATAAAAAAGAAGTTATAGTTAAAAATACATTAACAGGAGAAAAGTATTCTGAAAATTA TGATAAATTAATCTTATCTCCAGGAGCAACGCCAATAGTTCCACCAATTAAAGGGATTGAAAATGTAAATGTATTTACAG TAAGAAATGTAATGGATATAAAAAGATTAAGTGACAAATTAAAAAATAAAAAAGTTGAAAATATATCTGTTATTGGAGGA GGTTTTATAGGGGTTGAAGTTGCTGAAAATTTAAAAGAAGCAGGAAACGATGTTACTCTAATTGAAGCTATGCCTCATAT TATGAAACCCTTTGATTATGATATGGCACAAATTTTACACAAAGAATTTTATGATAATGGTGTAAATTTAATTGTAAAAG ATAAGGTTAGTGCTTTTGAAAAAGACACAGTAGTTTTAGAATCTGGAAGAAAAGTACAGGCTGAGGCTGTAGTTATGGCC ATAGGTGTAGCTCCAGATACAAGACTTGCAAAGGCGGCAGGATTAGAAATTGGAGAAACAGGAGCTATAAAAGTAGATCA AAATTATAGAACTAGTGATAAGGATATATATGCAGTAGGAGATGCTATTGAAGTTTATCATGCTCTAGCTAGAAAAACTA CTAAACTACCTTTAGCAGGACCTGCTCAAAAAGAAGCAAGACAGGTGGCAGATCATATTCATGGAAGAGTTGTTAGGAAT ACAGGCTTTATAGGAAGTTCAGTAATTAAATGTTTCGATTATAATGCAGCAGCCACAGGACTTAATGAAGAAATGATAGA AGCATTAAAATTAGACATAAAATATGAGGTGGCTAAGGTGATACCGGGAGATAAGGTAGGATTAATGCCAGATTGTGAGC CTCTACATTTTAAATTAATTTTCGAAATTCCTACAGGAAAAGTATTAGGGGCACAAGCTATTGGTAAAGGAAATGTAGAT AAGAGAATAGATATAATTGCTACAGCAATTAAATTTGGAGCTACTGTGGATGATCTAAGAGACTTAGAATTATGCTATGC ACCACCCTTTGGAACTGCTAAAGATGTAGTAAATTTTGCAGGCTATGTAGCATGTAATTTATTACAGGATGAATTTAGAC AAGTTAGAGAAAAAGATATAAGAAATATCGTAAAAGAAAAAGCTTTAATTATAGATGTAAGAGAGAAGCATGAATATGAA TTAAGTCATATTATTGGTGCAAAAAATATACCTCTTAGTGAGTTAAGAGATAGAATAAATGAAATACCTAAAGATGAGCC TGTGTATTTACACTGTAGAAGTGCTCAAAGAAGTTATAACGCATTAAAGGCTCTTAAAAATTTAGGTTATGAAAATATTT ATAACGTTTCTGGTGGATTTTTAGGAATTTCTTTTTATGAATACTTTAATGACATAACTACTAAAAGAGAAAAAATTCTT ACAGATTATAACTTTTTATAA
Upstream 100 bases:
>100_bases AAAATTATAAAATTAAGTAATCAATAAGTTTTATTTATAAATACAGCCATTATAAGGGGCTTAATACCTTGTACAATATA TTTTAATGGAGGTATAAATT
Downstream 100 bases:
>100_bases AATTAGAAATTGAGTAATCTAGCTTATTTAAATAACTATAAGGATTCTATGGTTCAAAAGGAGCTTTTATCTCAATTGAA CCATAGCAATTCTTAACTAG
Product: pyridine nucleotide-disulphide oxidoreductase family protein
Products: NA
Alternate protein names: CoA-disulfide reductase; CoADR [H]
Number of amino acids: Translated: 566; Mature: 565
Protein sequence:
>566_residues MSKKYLIIGGVAGGASTAARLRRLSEEDQIIMFEKDPYVSFSNCSLPYHLSGVVEDSNSLVLMTPEQFKAQYNIEARVNN EVITINRDKKEVIVKNTLTGEKYSENYDKLILSPGATPIVPPIKGIENVNVFTVRNVMDIKRLSDKLKNKKVENISVIGG GFIGVEVAENLKEAGNDVTLIEAMPHIMKPFDYDMAQILHKEFYDNGVNLIVKDKVSAFEKDTVVLESGRKVQAEAVVMA IGVAPDTRLAKAAGLEIGETGAIKVDQNYRTSDKDIYAVGDAIEVYHALARKTTKLPLAGPAQKEARQVADHIHGRVVRN TGFIGSSVIKCFDYNAAATGLNEEMIEALKLDIKYEVAKVIPGDKVGLMPDCEPLHFKLIFEIPTGKVLGAQAIGKGNVD KRIDIIATAIKFGATVDDLRDLELCYAPPFGTAKDVVNFAGYVACNLLQDEFRQVREKDIRNIVKEKALIIDVREKHEYE LSHIIGAKNIPLSELRDRINEIPKDEPVYLHCRSAQRSYNALKALKNLGYENIYNVSGGFLGISFYEYFNDITTKREKIL TDYNFL
Sequences:
>Translated_566_residues MSKKYLIIGGVAGGASTAARLRRLSEEDQIIMFEKDPYVSFSNCSLPYHLSGVVEDSNSLVLMTPEQFKAQYNIEARVNN EVITINRDKKEVIVKNTLTGEKYSENYDKLILSPGATPIVPPIKGIENVNVFTVRNVMDIKRLSDKLKNKKVENISVIGG GFIGVEVAENLKEAGNDVTLIEAMPHIMKPFDYDMAQILHKEFYDNGVNLIVKDKVSAFEKDTVVLESGRKVQAEAVVMA IGVAPDTRLAKAAGLEIGETGAIKVDQNYRTSDKDIYAVGDAIEVYHALARKTTKLPLAGPAQKEARQVADHIHGRVVRN TGFIGSSVIKCFDYNAAATGLNEEMIEALKLDIKYEVAKVIPGDKVGLMPDCEPLHFKLIFEIPTGKVLGAQAIGKGNVD KRIDIIATAIKFGATVDDLRDLELCYAPPFGTAKDVVNFAGYVACNLLQDEFRQVREKDIRNIVKEKALIIDVREKHEYE LSHIIGAKNIPLSELRDRINEIPKDEPVYLHCRSAQRSYNALKALKNLGYENIYNVSGGFLGISFYEYFNDITTKREKIL TDYNFL >Mature_565_residues SKKYLIIGGVAGGASTAARLRRLSEEDQIIMFEKDPYVSFSNCSLPYHLSGVVEDSNSLVLMTPEQFKAQYNIEARVNNE VITINRDKKEVIVKNTLTGEKYSENYDKLILSPGATPIVPPIKGIENVNVFTVRNVMDIKRLSDKLKNKKVENISVIGGG FIGVEVAENLKEAGNDVTLIEAMPHIMKPFDYDMAQILHKEFYDNGVNLIVKDKVSAFEKDTVVLESGRKVQAEAVVMAI GVAPDTRLAKAAGLEIGETGAIKVDQNYRTSDKDIYAVGDAIEVYHALARKTTKLPLAGPAQKEARQVADHIHGRVVRNT GFIGSSVIKCFDYNAAATGLNEEMIEALKLDIKYEVAKVIPGDKVGLMPDCEPLHFKLIFEIPTGKVLGAQAIGKGNVDK RIDIIATAIKFGATVDDLRDLELCYAPPFGTAKDVVNFAGYVACNLLQDEFRQVREKDIRNIVKEKALIIDVREKHEYEL SHIIGAKNIPLSELRDRINEIPKDEPVYLHCRSAQRSYNALKALKNLGYENIYNVSGGFLGISFYEYFNDITTKREKILT DYNFL
Specific function: Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=291, Percent_Identity=29.553264604811, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI65787454, Length=378, Percent_Identity=26.7195767195767, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI226437568, Length=291, Percent_Identity=29.553264604811, Blast_Score=117, Evalue=3e-26, Organism=Escherichia coli, GI1789065, Length=320, Percent_Identity=26.5625, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1788892, Length=283, Percent_Identity=26.5017667844523, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789765, Length=296, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786307, Length=329, Percent_Identity=27.355623100304, Blast_Score=86, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17559934, Length=239, Percent_Identity=28.0334728033473, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI24639257, Length=322, Percent_Identity=21.7391304347826, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI281359715, Length=322, Percent_Identity=21.7391304347826, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI281359713, Length=322, Percent_Identity=21.7391304347826, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI24639250, Length=322, Percent_Identity=21.7391304347826, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI18543267, Length=322, Percent_Identity=21.7391304347826, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI24639252, Length=322, Percent_Identity=21.7391304347826, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI24585130, Length=297, Percent_Identity=20.8754208754209, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017758 - InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.14 [H]
Molecular weight: Translated: 62942; Mature: 62811
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKYLIIGGVAGGASTAARLRRLSEEDQIIMFEKDPYVSFSNCSLPYHLSGVVEDSNSL CCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCEEEEEEEECCCCE VLMTPEQFKAQYNIEARVNNEVITINRDKKEVIVKNTLTGEKYSENYDKLILSPGATPIV EEECHHHHCEEEEEEEEECCEEEEEECCCCEEEEEECCCCCHHCCCCCEEEECCCCCCCC PPIKGIENVNVFTVRNVMDIKRLSDKLKNKKVENISVIGGGFIGVEVAENLKEAGNDVTL CCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCEEHHHHHHHHHHCCCCEEE IEAMPHIMKPFDYDMAQILHKEFYDNGVNLIVKDKVSAFEKDTVVLESGRKVQAEAVVMA HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHCCCEEEEECCCEEEEEEEEEE IGVAPDTRLAKAAGLEIGETGAIKVDQNYRTSDKDIYAVGDAIEVYHALARKTTKLPLAG EECCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCC PAQKEARQVADHIHGRVVRNTGFIGSSVIKCFDYNAAATGLNEEMIEALKLDIKYEVAKV CCHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHCCEEEEEEC IPGDKVGLMPDCEPLHFKLIFEIPTGKVLGAQAIGKGNVDKRIDIIATAIKFGATVDDLR CCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH DLELCYAPPFGTAKDVVNFAGYVACNLLQDEFRQVREKDIRNIVKEKALIIDVREKHEYE CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCCHH LSHIIGAKNIPLSELRDRINEIPKDEPVYLHCRSAQRSYNALKALKNLGYENIYNVSGGF HHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCE LGISFYEYFNDITTKREKILTDYNFL EEHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SKKYLIIGGVAGGASTAARLRRLSEEDQIIMFEKDPYVSFSNCSLPYHLSGVVEDSNSL CCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCEEEEEEEECCCCE VLMTPEQFKAQYNIEARVNNEVITINRDKKEVIVKNTLTGEKYSENYDKLILSPGATPIV EEECHHHHCEEEEEEEEECCEEEEEECCCCEEEEEECCCCCHHCCCCCEEEECCCCCCCC PPIKGIENVNVFTVRNVMDIKRLSDKLKNKKVENISVIGGGFIGVEVAENLKEAGNDVTL CCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCEEHHHHHHHHHHCCCCEEE IEAMPHIMKPFDYDMAQILHKEFYDNGVNLIVKDKVSAFEKDTVVLESGRKVQAEAVVMA HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHCCCEEEEECCCEEEEEEEEEE IGVAPDTRLAKAAGLEIGETGAIKVDQNYRTSDKDIYAVGDAIEVYHALARKTTKLPLAG EECCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCC PAQKEARQVADHIHGRVVRNTGFIGSSVIKCFDYNAAATGLNEEMIEALKLDIKYEVAKV CCHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHCCEEEEEEC IPGDKVGLMPDCEPLHFKLIFEIPTGKVLGAQAIGKGNVDKRIDIIATAIKFGATVDDLR CCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH DLELCYAPPFGTAKDVVNFAGYVACNLLQDEFRQVREKDIRNIVKEKALIIDVREKHEYE CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCCHH LSHIIGAKNIPLSELRDRINEIPKDEPVYLHCRSAQRSYNALKALKNLGYENIYNVSGGF HHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCE LGISFYEYFNDITTKREKILTDYNFL EEHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA