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The map label for this gene is rpoZ

Identifier: 153933120

GI number: 153933120

Start: 2522312

End: 2522530

Strand: Reverse

Name: rpoZ

Synonym: CLB_2386

Alternate gene names: 153933120

Gene position: 2522530-2522312 (Counterclockwise)

Preceding gene: 153933883

Following gene: 153931189

Centisome position: 65.29

GC content: 26.94

Gene sequence:

>219_bases
ATGAGCAATTCTATGATTAATCCATCAATAGTAAATTTATTAGAAAAGGTTGATGACAGATACTCATTAGTAACTATAAC
ATCTAAAAGATCAAGGCAATTAATAGATGGAGCAAAACCACTTGTAGATATAGATTCAACTAAACCTGTTACAGTAGCAA
TAAATGAAATACATGAAGGAAAAATAACCTATAAAACAGTTAAAGAAGGAATAAAATAA

Upstream 100 bases:

>100_bases
GAGGACGCAGTTAATAAGGTAAGAAGTATTATATTAGCGGAAAGCTGTAGAGTTGATAGAATGAAGGATACAATATTAGC
ATCAAAGGAGGAATTTATTC

Downstream 100 bases:

>100_bases
AATGAATAAAAAATGTGTAGTATTAGGTGTAACAGGAGGAATAGCTAGCTATAAAGCTCTAGATATAGTGAGCAAACTAA
AAAAGCTTAATTATGATGTA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MSNSMINPSIVNLLEKVDDRYSLVTITSKRSRQLIDGAKPLVDIDSTKPVTVAINEIHEGKITYKTVKEGIK

Sequences:

>Translated_72_residues
MSNSMINPSIVNLLEKVDDRYSLVTITSKRSRQLIDGAKPLVDIDSTKPVTVAINEIHEGKITYKTVKEGIK
>Mature_71_residues
SNSMINPSIVNLLEKVDDRYSLVTITSKRSRQLIDGAKPLVDIDSTKPVTVAINEIHEGKITYKTVKEGIK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CLOB1 (A7FW79)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384690.1
- STRING:   A7FW79
- GeneID:   5395556
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_2386
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   MEKVDSK
- ProtClustDB:   PRK00392
- BioCyc:   CBOT441770:CLB_2386-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8013; Mature: 7882

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSMINPSIVNLLEKVDDRYSLVTITSKRSRQLIDGAKPLVDIDSTKPVTVAINEIHEG
CCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCCCEEECCCCCCEEEEEECCCCC
KITYKTVKEGIK
EEEHHHHHCCCC
>Mature Secondary Structure 
SNSMINPSIVNLLEKVDDRYSLVTITSKRSRQLIDGAKPLVDIDSTKPVTVAINEIHEG
CCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCCCEEECCCCCCEEEEEECCCCC
KITYKTVKEGIK
EEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA