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The map label for this gene is yobQ [H]

Identifier: 152977328

GI number: 152977328

Start: 3710979

End: 3711701

Strand: Reverse

Name: yobQ [H]

Synonym: Bcer98_3653

Alternate gene names: 152977328

Gene position: 3711701-3710979 (Counterclockwise)

Preceding gene: 152977329

Following gene: 152977327

Centisome position: 90.82

GC content: 37.34

Gene sequence:

>723_bases
ATGCAAATATGTAAAGAGATTGTTGCGGAACGCCGAACGTATAGAGAGATTGAACATACACATGCTCACAGTCATGCTCA
GTTAATTTTACCTCTTCAAGGAGAACTTTCTATAAAAGCTGGGTTACAAAATCTTCTCATTGACCAGAAGACGTTATTTT
TTGTCCCTCCAGAATGCACCCATACGTTTCATTCTGCTGTACGCAATGAATTTTTAGTGCTGGATATTCCTCATTTCATG
ATTCCTGAAGGAAATATGCAAAGGACAGGGATTTCACATGTGTTCGATAAACAGTGGAAAAGTATTCGCTATCTCATTTT
ACATGAAATAGAACAAGGACAATCTTCCTTGAACGAACTCTATCCATATATTTCGCGCTGCTTATTCAAGGAGCGACATC
CGAAGTCTATTCAATATATTCATGAACATTATGATAAAAATATAACTGTGCAACAATTAGCGGCGCTTGAGCACTATAAT
CGTTCTTATTATTCGGAGTGGTTTCTAAAAGAAACGGGAAAATCTCCATCGGTATACATACAGGAAGTTCGCCTTAATAA
AGCAAAAGAATTATTGCGAAATACAAATTTATCCATTATGCATATTGCCATACAGGTTGGGTTAGAGCATCAGTCTTCTT
TAACTCGCTTGTTCCAAAAGTATGAGGGGATGTCACCGAGTCAATATCGCAAAGGTGATAGGGACGATGTAACGAATATA
TGA

Upstream 100 bases:

>100_bases
ATTTGAAAAAACATTAAAAAGTAGTGCAGACCGTGCGATTGGTTTGCACTACTTTTTTTGATATGATAAATCCAAATATG
AAAAGGGAGAAGAAGAGCAT

Downstream 100 bases:

>100_bases
CATAGAGATAAAAATAGCTGATTTTTGGTGAAAAATCTTTTATTTCATTTGTTTAAAATGTAGGTAGGTATTTCAAAAAT
TGGAGGGAGCATATATGGCA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECTHTFHSAVRNEFLVLDIPHFM
IPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNELYPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYN
RSYYSEWFLKETGKSPSVYIQEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI

Sequences:

>Translated_240_residues
MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECTHTFHSAVRNEFLVLDIPHFM
IPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNELYPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYN
RSYYSEWFLKETGKSPSVYIQEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI
>Mature_240_residues
MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECTHTFHSAVRNEFLVLDIPHFM
IPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNELYPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYN
RSYYSEWFLKETGKSPSVYIQEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=95, Percent_Identity=34.7368421052632, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28288; Mature: 28288

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECT
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHH
HTFHSAVRNEFLVLDIPHFMIPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNEL
HHHHHHHHCCEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYNRSYYSEWFLKETGKSPSVYI
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI
HHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECT
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHH
HTFHSAVRNEFLVLDIPHFMIPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNEL
HHHHHHHHCCEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYNRSYYSEWFLKETGKSPSVYI
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI
HHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]